PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000764803
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 441aa    MW: 49591.8 Da    PI: 6.9662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000764803genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19201251256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  MDP0000764803 201 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 251
                    59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-34200260No hitNo description
Gene3DG3DSA:3.30.730.103.7E-32201259IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23201259IPR016177DNA-binding domain
SMARTSM003801.5E-40201264IPR001471AP2/ERF domain
PROSITE profilePS5103222.998201258IPR001471AP2/ERF domain
PfamPF008472.6E-12202251IPR001471AP2/ERF domain
PRINTSPR003677.7E-11202213IPR001471AP2/ERF domain
PRINTSPR003677.7E-11224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAAAKKSGKS RMETSVDWEA NKDGELDFSF ERPPWKPGFS EASMASNRPL KKVKSPERQD  60
PIQSSPSLAH QTPSPIIAPY PSSSSKIVFP FSFNGSQQPM MQFPPQFNPT NVPLLPSPIQ  120
HQQQQNXQQM ISFESQQLQQ QQMSYPPPAT LTWQQHQQIL QYWSDALNLS PRGRAMMMNR  180
LGPDGRPMFR APAMPYNTTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEDAAMA  240
YDREAFKLRG ENARLNFPEL FLNKDKSDVP TSSDPSSAAT SPPTHESSKP TRRRKQPQKV  300
KRSASNVEAM PPPPIPHTQE ENSTDNDSGL EFSEAKVIDE IEANTDCAGG NSQQEEIVWG  360
DMADAWINAI PAGWGPGSPV WDDLDANNNL LLQSHLPFTN PNQQDYNTNI CPQQVLHNSG  420
XGSSSSSSYP MKNFFWKDQD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20200258160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20200258463ATERF1
3gcc_A3e-20200258463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295TRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6698220.0JQ669822.1 Malus x domestica dehydration-responsive element-binding protein (DREB6) (DREB6-1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342928.20.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A498HD240.0A0A498HD24_MALDO; Uncharacterized protein
STRINGXP_008342928.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-54ERF family protein