PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000763939
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 540aa    MW: 60574.1 Da    PI: 6.263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000763939genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057119140223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C  C+k F++  +L+ H+r+H
  MDP0000763939 119 SCYVCKKDFPSIKSLHGHMRLH 140
                    69******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.3676491IPR007087Zinc finger, C2H2
SMARTSM003551.46486IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-46586IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM003550.71118140IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954118145IPR007087Zinc finger, C2H2
SuperFamilySSF576677.03E-7119140No hitNo description
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
PfamPF139121.3E-5120142IPR007087Zinc finger, C2H2
SuperFamilySSF576677.03E-7466493No hitNo description
SMARTSM003552.5471493IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-5471493IPR007087Zinc finger, C2H2
PROSITE patternPS000280473493IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MKDFQEKNEH LREDHEEEEN QEIVDDDVHS QETEEQVPVS DDDEHKGKQV VLNSDVVHHR  60
SGDRVCEQCG KIFQNGKALG GHRKVHFNQS LLPKKNKALF KPKKKHVASN EGGXSSEVSC  120
YVCKKDFPSI KSLHGHMRLH RERDWKGVRP PGAVQPPSEE SKSSSYENDS SDDDNDDGDG  180
DSSFSDHTIE TDNDAAKFLV NWMKIEQRRR IANQRDPNGE DKVREFRGKK LIEESPVGYK  240
GNPSSKNMKF DGRSSKKITM EGSKSFGGTK PKKYIGLLDQ TLNQISSKPQ EFRFSRSDAT  300
MSDMNESGFS SKYAADQVSE SASEKAIEES PRGYKGNTPL RIKLKLDGRS NKTLDKSRSS  360
RSVSFVLNKL SVGGKEKISV EEDDDDENAD QISWKVKSKK AMMKGVSKTD KKPIKDTALL  420
DQARYQIPXR TQEFGATYAE RGNYNGSSAT SNQVXERAEE AEAVEQETKQ FVCNICPCKF  480
STGQALGGHK RGHNYRMAVE NAPGKAEVAP VDEEDREISI VPEKLDLDLN QLPYESNDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945175.10.0uncharacterized protein LOC114819735
TrEMBLA0A498IR390.0A0A498IR39_MALDO; Uncharacterized protein
STRINGXP_008358936.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16199410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-14C2H2 family protein