PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000757090
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 308aa    MW: 33452.1 Da    PI: 9.9497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000757090genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035119141123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  MDP0000757090 119 FSCNYCRRKFYSSQALGGHQNAH 141
                    89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-6116146No hitNo description
PROSITE profilePS5015711.385119146IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKPHASDPSL SENSSIFPRS EAPLPPNLLE GPNMVTPSAE KQPSVQDHHQ GHPQDQIRNL  60
ALDLSLSNKK SDHGSKPELN LINCFDSNNT SRNSSSETSS PKGATTTTTA TTDFKPRVFS  120
CNYCRRKFYS SQALGGHQNA HKRERTLAKK GQKSNCTAAA EDALMRLPSL LSSHRFSSMA  180
SLPLHGSFND RSLGIQVHST IHKPCYQSNT FGENNNGNYG WFRRPIDHQH AIGRLVSPNN  240
VFHVQGGVGS SSSPSSGGVG RFSYSTNGRK FSPVAEGIGG LWWTNSAAGH FNAKQDELQK  300
LDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358113.10.0zinc finger protein 1-like isoform X1
TrEMBLA0A498J3M20.0A0A498J3M2_MALDO; Uncharacterized protein
STRINGXP_008358113.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.16e-37zinc-finger protein 1