PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000754989
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 456aa    MW: 51619.8 Da    PI: 7.0429
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000754989genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY728.2e-23138198259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+++++++pr+Y+rCt++    C+++k+v++ ++ p+v+ +tY g+H ++
  MDP0000754989 138 ADGHAWRKYGQKNIHNAKHPRNYFRCTHKydqACKATKHVQQVQDHPSVFRTTYYGTHSCR 198
                    7***************************99999*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-23125198IPR003657WRKY domain
PROSITE profilePS5081118.82132196IPR003657WRKY domain
SuperFamilySSF1182903.14E-21136198IPR003657WRKY domain
SMARTSM007745.3E-32137199IPR003657WRKY domain
PfamPF031069.7E-23139198IPR003657WRKY domain
PfamPF162122.1E-21307414IPR032630P-type ATPase, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MVEELIQGRE LASQLSRVFD NRPILVNGVD GGSDEGTVNK ILGSFVNTLL ILNGKESDQE  60
FVPDQIQGNS NDVSGGGGGA DSSSWVGNHD HAAVIKSEDY TEEEISCKST STFKDRRGSY  120
KRRKTSHSWT RDIPALIADG HAWRKYGQKN IHNAKHPRNY FRCTHKYDQA CKATKHVQQV  180
QDHPSVFRTT YYGTHSCRDY LKTSELVLDC TNPRDSSKFI SFDNVNCFTN KQEHPFPASF  240
TSSSVKKELV VKATSDHTVT SHHNHSLPSD YLVLHDDLME FASSEPMGGF SSSIDQYDHD  300
DVFLRMFAEK PLIHYVLHVK DLSHRTLLQY PKLYGAGHRH EAYNLHLFWI TMLDTLWQSL  360
VLFYVPLFTY KDSSIDIRSM GSLWTIAVVV LVNIHLALDI HRWVSITHIA NTLTPFSLNF  420
XVHTKPEASE LSKGLVPGRD ENIHIRLTCP LPWAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-231391981069OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388369.10.0WRKY DNA-binding transcription factor 70-like
TrEMBLA0A498ILB80.0A0A498ILB8_MALDO; Uncharacterized protein
STRINGXP_008388369.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-28WRKY DNA-binding protein 70