PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000737672
Common NameLOC103404339
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 333aa    MW: 37436.7 Da    PI: 5.0612
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000737672genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.4e-2177130356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t++q++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  MDP0000737672  77 KKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 130
                    5678*************************************************9 PP
2HD-ZIP_I/II135.22.2e-4376167192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekkrrl+ +qv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+++L++++ 
  MDP0000737672  76 EKKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDTLLSNYDSILKENQKLKSQVV 167
                    69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.96172132IPR001356Homeobox domain
SMARTSM003891.5E-2075136IPR001356Homeobox domain
SuperFamilySSF466898.98E-2077143IPR009057Homeodomain-like
CDDcd000865.52E-2077133No hitNo description
PfamPF000463.7E-1877130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-2278139IPR009057Homeodomain-like
PRINTSPR000315.5E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000315.5E-6112128IPR000047Helix-turn-helix motif
PfamPF021832.5E-17132173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMEPGRLFFE PSPSVCQQGG GGNMLFLGNP DHVFRGPRSM MGLXDQESSR RRPFFSSSSS  60
QDELFDEEYY DEQLPEKKRR LTPDQVHMLE KSFETENKLE PERKTQLAKK LGLQPRQVAV  120
WFQNRRARWK TKQLERDYDL LKSSYDTLLS NYDSILKENQ KLKSQVVSIN EKLGGKEEAN  180
STKAATFAGA DHDDEKRGPL LPAGDQMTEV VPITSLQHSC TIKAEDRLSS GSGGSAVVDE  240
AEGAQPVDSG DSYNFPNNIH NDYPHDHDTH HHHHQYVAPH DHVEHHHSGV HSEEDDGSDD  300
GQGYFSDVFA VAAAEQQAAQ EEGVSLGWWV WS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.115230.0cell culture| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5299630.0KF529963.1 Malus domestica homeobox-leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280808.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022839e-80HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A3G6III00.0A0A3G6III0_MALDO; HB2
STRINGXP_008341460.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-72homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]