PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000736852
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 375aa    MW: 41562.9 Da    PI: 4.601
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000736852genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18102155356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV+vWFqNrRa++k
  MDP0000736852 102 KKRRLNVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVSVWFQNRRARWK 155
                    566899***********************************************9 PP
2HD-ZIP_I/II127.65.4e-41101193193
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    ekkrrl+ eqvk+LE++Fe e+kLeperKv+la+eLglqprqv vWFqnrRAR+ktkqlE+dy +Lk+ yd+lk + + L++++e+L +e+k+
  MDP0000736852 101 EKKRRLNVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVSVWFQNRRARWKTKQLERDYGVLKADYDSLKCSYDILQHDNEALLKEIKQ 193
                    69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1984159IPR009057Homeodomain-like
PROSITE profilePS5007117.71897157IPR001356Homeobox domain
SMARTSM003891.3E-17100161IPR001356Homeobox domain
PfamPF000465.9E-16102155IPR001356Homeobox domain
CDDcd000862.40E-16102158No hitNo description
Gene3DG3DSA:1.10.10.601.3E-19104163IPR009057Homeodomain-like
PRINTSPR000318.6E-6128137IPR000047Helix-turn-helix motif
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PRINTSPR000318.6E-6137153IPR000047Helix-turn-helix motif
PfamPF021838.7E-17157198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVREFGSNMG GVKDVSSSGD DGETIENVVV VVAMMTVVVA NGGGEEVGLK EKKDHEAAAA  60
AAEGGNEQSP RSNHVYSREF QSMLEGLDED GCVEEAGRVS EKKRRLNVEQ VKALEKNFEV  120
ENKLEPERKV KLAQELGLQP RQVSVWFQNR RARWKTKQLE RDYGVLKADY DSLKCSYDIL  180
QHDNEALLKE IKQLKAKFQE NTESTNPSVK QEKLLGKDQS SYRAVHEGSQ SPPPPPESSV  240
PETECKEFNF ESFNNTSGVL EAVSLFPDFK DGSSDSDSSA ILNEDNSPNL TMSSSGILQN  300
HQLIKSPAST SLKFNCCSSS SPSPSSMNCF PFQKSYQPSV KVEEHNLFSS EEACSFFSDE  360
QAPSLQWYCP DQWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.67430.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6219081e-114AB621908.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH184.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365820.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6 isoform X1
RefseqXP_018505045.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6 isoform X1
TrEMBLA0A498KNY80.0A0A498KNY8_MALDO; Uncharacterized protein
STRINGXP_008374198.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-62homeobox protein 16