PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000726295
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14728 Da    PI: 4.8503
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000726295genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.43.7e-081232143
                   HHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF 21 lKKAeELSvLCdaevaviifsst 43
                   +KK +ELS+LC+++++ i++s+ 
  MDP0000726295  1 MKKVKELSILCGIDASAIVYSHY 23
                   8********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.37E-11166IPR002100Transcription factor, MADS-box
PfamPF003198.5E-6122IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MKKVKELSIL CGIDASAIVY SHYDTKPEVG PDPDVTRRII TRFKQMQEMD KRKNMLNQES  60
ILRQQIVKVE EQLKKQNKEN QEKEIMIQSM YGSLPADCLQ NLSGTDLNGL LLSIEKSIEA  120
IEEEMQEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343298.24e-70agamous-like MADS-box protein AGL80
TrEMBLA0A498JCJ75e-68A0A498JCJ7_MALDO; Uncharacterized protein
STRINGXP_008363238.17e-88(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1782336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.15e-19M-type_MADS family protein