PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000715138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 239aa MW: 26661.5 Da PI: 4.9441 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 24.5 | 3.1e-08 | 130 | 169 | 13 | 52 |
GRAS 13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaar 52 ++ d a + L rl+el+s + dp++R+a+yf+eAL++r MDP0000715138 130 TKFDPDGAVKSLVRLRELVSDHEDPTERVAFYFAEALQNR 169 55677789999***************************98 PP | |||||||
2 | GRAS | 43.2 | 6.4e-14 | 173 | 213 | 82 | 122 |
GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqG 122 ++ +++ P+ kf+hltaNqaIlea+++++++Hi+Df i q MDP0000715138 173 TIAYDTYPYSKFAHLTANQAILEATKRATKIHIVDFRIVQA 213 5668999******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.58 | 93 | 238 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-5 | 130 | 169 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-11 | 173 | 213 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTQQQPPHSA GFRFSDLGYS SPAEFDSDEW MDSIKGGGDS TDSSNLPSTC DTWQGSNFDF 60 GIYGANPFRP HCPTWTPPLP QQLHQVSVKE SKSTDPQSLQ NDTVGVSLKS PEIESEPLLL 120 KAFLDSARLT KFDPDGAVKS LVRLRELVSD HEDPTERVAF YFAEALQNRK SFTIAYDTYP 180 YSKFAHLTAN QAILEATKRA TKIHIVDFRI VQAAFNYIET ALSKFEDXPF FLGKFSLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-21 | 119 | 212 | 4 | 120 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.1352 | 1e-119 | bud| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008338470.2 | 1e-111 | SCARECROW-LIKE protein 7 | ||||
Refseq | XP_009350005.1 | 1e-111 | PREDICTED: scarecrow-like protein 4 | ||||
Swissprot | A0A024B7I0 | 3e-53 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | D9ZJB6 | 6e-96 | D9ZJB6_MALDO; SCL domain class transcription factor | ||||
STRING | XP_009350005.1 | 1e-111 | (Pyrus x bretschneideri) | ||||
STRING | XP_008338470.1 | 1e-111 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 1e-40 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000715138 |