PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000697271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 26696.2 Da PI: 8.2124 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.4 | 9.8e-38 | 51 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC +dC+lap+fpa++p++f+n+h+l+G+sn+ +lk++ ++++++da++s+vye+++ra+ Pv G++g+i++l+ ql++ +el MDP0000697271 51 ACAACKHQRKKCXQDCPLAPHFPASKPQTFRNAHRLYGVSNIKTILKQIhDPQQKTDAVQSIVYESDMRAKFPVTGCLGIINQLNFQLQEXMKELY 146 7************************************************66777****************************************99 PP DUF260 96 llkee 100 +++++ MDP0000697271 147 HVRTH 151 88765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.754 | 50 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.8E-36 | 51 | 148 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MKPAPYSITS AAAVPXTLYL CIVLIPASVF GRTFFGFPTM PAKGGGSAGQ ACAACKHQRK 60 KCXQDCPLAP HFPASKPQTF RNAHRLYGVS NIKTILKQIH DPQQKTDAVQ SIVYESDMRA 120 KFPVTGCLGI INQLNFQLQE XMKELYHVRT HLAAVCKDQL LXDHXNRRIE DNLHFQDDDP 180 DYRNLVNPAA LRPVQVQQPY NFFPPAQAFS IRAEQETDAP APPNYQCYHD LDSNDRY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-25 | 38 | 152 | 3 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-25 | 38 | 152 | 3 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008375592.1 | 1e-166 | protein ASYMMETRIC LEAVES 2-like | ||||
Refseq | XP_028960658.1 | 1e-166 | protein ASYMMETRIC LEAVES 2-like | ||||
TrEMBL | A0A498JBD2 | 1e-165 | A0A498JBD2_MALDO; Uncharacterized protein | ||||
STRING | XP_008375592.1 | 1e-166 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 7e-24 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000697271 |