PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000690979
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 569aa    MW: 65164.9 Da    PI: 5.1195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000690979genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015303322322
                    ETTTTEEESSHHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                    C  Cgk F++  + k+H ++
  MDP0000690979 303 CVVCGKKFKSEKQWKNHEQS 322
                    9****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.44E-244112IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.9E-24581IPR001623DnaJ domain
SMARTSM002712.9E-23769IPR001623DnaJ domain
PROSITE profilePS5007619.673877IPR001623DnaJ domain
CDDcd062575.61E-18866IPR001623DnaJ domain
PfamPF002267.8E-22974IPR001623DnaJ domain
PRINTSPR006251.9E-151028IPR001623DnaJ domain
PRINTSPR006251.9E-152843IPR001623DnaJ domain
PRINTSPR006251.9E-154969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.38E-10291330No hitNo description
PROSITE profilePS501578.808301330IPR007087Zinc finger, C2H2
PfamPF121711.3E-9302326IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280303325IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAASDRRCHY EVLGLARDCS ADEIRSAYRK LALQRHPDKL VQSGLSQSEA TAQFQELAHA  60
YEVLSDPKER AWYDSHRSQI LFSDRRSAAS GSGSGIPDLF SFFSTTVFSG YSDSGRGFYK  120
VYSXVFNKIY ANELNFARKL GLGLDTVAEA PAMGNLESPY VQVTAFYNYW AGFCTVMDFC  180
WEDKYDVXXG PNRKSRRLME EENKKERKKA KREFNXTVRG LXDFVKKRDK RVIDMMLKKE  240
EERVRKREEE RERKKKLEKE KLERAMAYEE PEWAKVEEEE GGNGVEELEE XEEEXXRRKE  300
XYCVVCGKKF KSEKQWKNHE QSKKHRDKXA EXXESXGXXL EXDDEXVLEG EGEERGELGD  360
VDELGQEIRE GLKIGEEEDG XGXSDQEDEL HEFGGENGNE KVDEALGLDG DENEDEMGVL  420
EAMVAGRKIK KNVAFWVERE DKDDDDAEFM EYNNRKSARR KGGARKERSK KSGGEANNVD  480
KSGNNGXQSE ESNEQDNSNM KESTSHSVVE NESXDKGDEH LARKKKSSSK AVDKKEKVKK  540
VVNDKLKNSS NGKKSKVRSL LFMLHEIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211KKERKKAKR
2242254RVRKREEERERKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393226.20.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-169JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A498I5J00.0A0A498I5J0_MALDO; Uncharacterized protein
STRINGXP_008393226.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-128DNAJ heat shock N-terminal domain-containing protein