PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000683389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YB | ||||||||
Protein Properties | Length: 193aa MW: 21538.4 Da PI: 9.5467 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 156.4 | 4.8e-49 | 52 | 147 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqd +lPianv+rimk++lP +akisk+ak+t+qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+++ yl+kyre+e++k MDP0000683389 52 QEQDGMLPIANVGRIMKQILPPRAKISKEAKQTMQECATEFLSFVTGEASDKCHKENRKTVNGDDICWALSALGFDNYAQAAMRYLHKYRETERDK 147 69********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-47 | 49 | 170 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.1E-37 | 54 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-25 | 58 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.2E-16 | 85 | 103 | No hit | No description |
PRINTS | PR00615 | 3.2E-16 | 104 | 122 | No hit | No description |
PRINTS | PR00615 | 3.2E-16 | 123 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MRPKDNGTNQ ARKAQLRLSA PGLIKQRVCV RKDQSTPPKS NCMDQSINMV DQEQDGMLPI 60 ANVGRIMKQI LPPRAKISKE AKQTMQECAT EFLSFVTGEA SDKCHKENRK TVNGDDICWA 120 LSALGFDNYA QAAMRYLHKY RETERDKAAA NNNQNTANIT SHGGLQVREQ TQTSNLEFRV 180 LEKGDNSLIT KP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 8e-39 | 52 | 142 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 8e-39 | 52 | 142 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00133 | DAP | Transfer from AT1G09030 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008370459.2 | 1e-110 | nuclear transcription factor Y subunit B-4 | ||||
Swissprot | O04027 | 7e-54 | NFYB4_ARATH; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A498K340 | 1e-104 | A0A498K340_MALDO; Uncharacterized protein | ||||
STRING | XP_009376649.1 | 1e-105 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09030.1 | 5e-54 | nuclear factor Y, subunit B4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000683389 |
Publications ? help Back to Top | |||
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