PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000670432
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 310aa    MW: 34566 Da    PI: 8.0838
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000670432genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-18139193256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq   Lee F++++++++++++eLAk+l+L  rqV vWFqNrRa+ k
  MDP0000670432 139 RKKLRLSKEQSLLLEETFKEHNTLNTKQKQELAKQLNLRARQVEVWFQNRRARTK 193
                    788899***********************************************98 PP
2HD-ZIP_I/II118.63.5e-38139228191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rlskeq+ lLEe+F+e+++L++++K+ela++L+l++rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+e+n+rL+kev+eLr +l
  MDP0000670432 139 RKKLRLSKEQSLLLEETFKEHNTLNTKQKQELAKQLNLRARQVEVWFQNRRARTKLKQTEVDCELLKRCCEKLTEDNRRLHKEVQELR-AL 228
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-2514108IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.5E-19119193IPR009057Homeodomain-like
SuperFamilySSF466892.82E-19122196IPR009057Homeodomain-like
PROSITE profilePS5007117.686135195IPR001356Homeobox domain
SMARTSM003896.1E-15137199IPR001356Homeobox domain
PfamPF000461.1E-15139193IPR001356Homeobox domain
CDDcd000866.64E-15139196No hitNo description
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
PfamPF021831.1E-10195229IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.2E-26195238IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSEKMKDMKG LGLGLGSSLS LGLKPNESEP CLQLNLMEKP SHPMQNHPHR TSWNEIFQFP  60
DRNPNTRSFI GGIDVNEAPS MADFEEENGI SSPNSTVSSL SGKRSDREPI VDENEGERTS  120
CSHGGGSDDE DGYGGDMSRK KLRLSKEQSL LLEETFKEHN TLNTKQKQEL AKQLNLRARQ  180
VEVWFQNRRA RTKLKQTEVD CELLKRCCEK LTEDNRRLHK EVQELRALKL SPHFYMQMNP  240
PTTLTMCPSC QRVAVSSSSS SAAVPASSTT LANAPTRQHG PPNIQRPIPI SPWAKLPIQH  300
PTLDASAPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143SRKKLRL
2187195RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017180759.20.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-99HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A498KGG90.0A0A498KGG9_MALDO; Uncharacterized protein
STRINGXP_008343628.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-86homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]