PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000668914
Common NameC2H2L22
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 264aa    MW: 29341.3 Da    PI: 9.1139
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000668914genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002979101123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C k F ++  L  H++ H
  MDP0000668914  79 FECQYCFKEFANSQALGGHQNAH 101
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-574105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.47E-675106No hitNo description
PROSITE profilePS5015711.40679106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MQSKTYSAGS CVEKKLRLFG FELNPRRNEE ASIKGGGSSA EGGGDESVNS SNSVSHPIKL  60
ERSRENEKSS TSEPDDKKFE CQYCFKEFAN SQALGGHQNA HKKERMKKKR LQLQARKASI  120
NSYLQPFQTF HHHGSTAAPS WFYDPSSYLS SDHPFTLHEE SRISFIPFDQ NYGSSSGSHS  180
KVSNWYSMPP QQQFPSSQTG EQDHLTNPNK FTLTQTDRSG ESRPVVFMPS PLSASTHQSC  240
KPLDLQLGLG SPAKIQRSSR SEV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.169820.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315948.10.0zinc finger protein 5
TrEMBLD9ZIT20.0D9ZIT2_MALDO; C2H2L domain class transcription factor
STRINGXP_008389587.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-16zinc finger protein 5