PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000666991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 538aa MW: 61148.5 Da PI: 4.3893 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 131 | 1.3e-40 | 167 | 534 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++ L ++ ea++ g+ +l + ++ l e ++p g++++Rla+y+ + ++ + l+ ++ ++ a+++f++++P+ +f+h + MDP0000666991 167 RHMLKAFNEAMEMGQRKLEEVIMRFLAEKVNPLGQSLERLAFYLCLGFVDNQQG------DYLKQES-----FKNFEDAFNMFYQIFPFGRFAHYA 251 788999999************************************999988888......4444433.....4566678999************** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvak.r 185 aN aIleav ++ e+vH++ fdi++G+Q p L++a a+R++ l++T+++ ++ + + eet+++L++ A ++g++++ + + + MDP0000666991 252 ANTAILEAVPEDvETVHVVEFDIGEGVQLPQLIEAVAKRNKT---LKVTAIKWDVEEsdevapPQWRFEETKRQLQHHAXSFGLNLKVEEIXIEdL 344 *********9999**************************765...******976555668899999***********************9944414 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleak 274 ++ ++ + r +E la n+++ l ++ + ++ e+L+l k+l + ++++ + + a + n++sF f + +y al+ sle++ MDP0000666991 345 VSXIKKXNKRGGXREFLAFNSMVGLPHMR--RRRSRGLLMEFLRLAKDLLTNsargIITFGDGDayARRgNDSSFISFFDANVVHYEALLGSLESS 438 4445555545555**************97..4444445789*******966544569*****99655568************************** PP GRAS 275 lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLv 368 +p++ e+r+++E +++++ +++ e+ + + +l+ W +G++ ++s ++ ++ak ++ +s g rv e+ ++++l W++ pL+ MDP0000666991 439 FPSHLgEARMVMELMFVAPYVSSQAWFEKWNEAREAGNLHPW------FGLEGRRVSREMLMEAKEIVGADSSYGVRVGgENGNEMTLEWNSIPLI 528 **999899***********************88999999999......8*****************************967778888********* PP GRAS 369 svSaWr 374 v W+ MDP0000666991 529 RVETWT 534 **9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.958 | 140 | 513 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.6E-38 | 167 | 534 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MMQSEMNFQT FWPCLNETNS TLDTNEYTEQ MGSSEFSSIF MPSDEFSETS NSFPFSTMFS 60 GESEQLADCD HLLQATWMAE EEFTIELGGF ETNYLMGEIE NMYASCVEGS EGSNTLPSPQ 120 FSVEGNGVWS PNSFVTSEAS SMDVTSVQQS ITLARDEMEI NSEVRIRHML KAFNEAMEMG 180 QRKLEEVIMR FLAEKVNPLG QSLERLAFYL CLGFVDNQQG DYLKQESFKN FEDAFNMFYQ 240 IFPFGRFAHY AANTAILEAV PEDVETVHVV EFDIGEGVQL PQLIEAVAKR NKTLKVTAIK 300 WDVEESDEVA PPQWRFEETK RQLQHHAXSF GLNLKVEEIX IEDLVSXIKK XNKRGGXREF 360 LAFNSMVGLP HMRRRRSRGL LMEFLRLAKD LLTNSARGII TFGDGDAYAR RGNDSSFISF 420 FDANVVHYEA LLGSLESSFP SHLGEARMVM ELMFVAPYVS SQAWFEKWNE AREAGNLHPW 480 FGLEGRRVSR EMLMEAKEIV GADSSYGVRV GGENGNEMTL EWNSIPLIRV ETWTNRS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.4501 | 2e-73 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009337756.2 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A498IEP8 | 0.0 | A0A498IEP8_MALDO; Uncharacterized protein | ||||
STRING | XP_008366908.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4274 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 8e-20 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000666991 |