PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000654314
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 292aa    MW: 31871.9 Da    PI: 6.5128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000654314genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19127176255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp+    r kr +lg+f t e+Aa+a+++a+ ++ g
  MDP0000654314 127 KYRGVRQRP-WGKWAAEIRDPR----RaKRMWLGTFETXEDAARAYDKAAVEFXG 176
                    8********.**********82....48**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-13127174IPR001471AP2/ERF domain
PROSITE profilePS5103224.869127184IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22127185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-32127184IPR001471AP2/ERF domain
SMARTSM003803.4E-35127190IPR001471AP2/ERF domain
CDDcd000182.32E-31127184No hitNo description
PRINTSPR003674.0E-11128139IPR001471AP2/ERF domain
PRINTSPR003674.0E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MPFHANRIQK EQEHCIMVSA LKHVISGGSI SGPTPQHPQP MPAVYNAMSS VSTSGTQSAA  60
GQPAQQDQGR LAFLLDGDTC RVCGIPGCLG CNYFPPSLPN QNRNQQLSLG TGFVGMNAPT  120
TRKSKNKYRG VRQRPWGKWA AEIRDPRRAK RMWLGTFETX EDAARAYDKA AVEFXGNKAK  180
LNFPSDPGGH IVTTNDSSSS GTSANASINP GLINKQKQKN ISEIEVMENE EEKVDQVKLN  240
QATQPENMEL XAVATAKSSV GHEEDDQFLL WDNGLLRDGE DDDLMAWLSM N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22128184360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302451e-137fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324701e-134GU732470.1 Malus x domestica AP2 domain class transcription factor (AP2D46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008352506.20.0ethylene-responsive transcription factor ERF109-like
TrEMBLA0A498HV530.0A0A498HV53_MALDO; Uncharacterized protein
STRINGXP_008338309.10.0(Malus domestica)
STRINGXP_008352506.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.19e-36redox responsive transcription factor 1