PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000652415
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 268aa    MW: 29803.4 Da    PI: 7.4495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000652415genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52e-12145240187
                    EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS
             B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 
                    f+k++t  dv+ + +rl+l k+ ++++       +++ ee++ +t++d++g  +e++l  ++++ r++ ++GWk+F ka+gL   +Df+++ + ++
  MDP0000652415 145 FEKQMTETDVNHLyQRLILYKNDVKRYlspllieKESLEEGVNVTVYDTNGVDYEMELGTWNSGTRVLAGEGWKNFRKAHGLMaYRDFLTLWMFRN 240
                    99********999999***************99855556999****************99**********************96689999876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-15142250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-14145249IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0013145255IPR003340B3 DNA binding domain
CDDcd100176.23E-16145249No hitNo description
PfamPF023621.5E-9145245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MINRKSRKRS SRRTPSSSGT ANQPQNPPEA TEVVEALLGL SSGQIPSSSG TANQPLNSPQ  60
GIQGAQTLCS FTKSGGNHQQ EAAESEQELE AQQEALQNQE GGGGGEEEVE QRPFYGIGNY  120
VPSRLPPLPN HLLGLIQGQQ CSNPFEKQMT ETDVNHLYQR LILYKNDVKR YLSPLLIEKE  180
SLEEGVNVTV YDTNGVDYEM ELGTWNSGTR VLAGEGWKNF RKAHGLMAYR DFLTLWMFRN  240
ADTTKLCMFI SCRRLPVVQT IKRQGRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498KED15e-91A0A498KED1_MALDO; Uncharacterized protein
STRINGXP_008363030.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-19B3 family protein