PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000652413
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 413aa    MW: 45616.5 Da    PI: 9.8219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000652413genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-1862112155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  MDP0000652413  62 PVYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 112
                    68*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-1262112IPR001471AP2/ERF domain
PROSITE profilePS5103223.06463120IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2163120IPR016177DNA-binding domain
SMARTSM003802.7E-3463126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3163120IPR001471AP2/ERF domain
PRINTSPR003675.7E-106475IPR001471AP2/ERF domain
CDDcd000181.45E-2964120No hitNo description
PRINTSPR003675.7E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MADPTHSETE SSFNSSSHSP PSPSSSGFSH SIPNPGQNPL REMSNSPDPD QKRARETSSK  60
HPVYRGVRMR TWGKWVSEIR EPRKKSRIWL GTFSTPEMAA RAHDVAALTI KGNSAILNFP  120
GLVGLLPRPD SNSPRDIQAA AAKAASMETL NTPPPPPSQS SSSSSSALSQ SSPSSSTVGA  180
TSTSEDAGTP EELEEIVELP SLGTSYESAE SGSELVFADS VEGWLYPPPW WHNSYFEEDY  240
GYNSLINSFI RDDQMLMPEP PAAECVEXLV EGGYSKWWSN VEDGXGLSIE AYHRVLGAYN  300
KVAHKKRKXK DKNDRXKYRR RSKRRRLYAE AEARAXMXGG VRRQLLGQTQ RGEAKGDPAR  360
ATKVVGKPQQ SKNLHKTCGR GCRWPKPKPK QRIDPCRFTK LGFMVRPESI FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1854120572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305320KRKXKDKNDRXKYRRR
2305325KRKXKDKNDRXKYRRRSKRRR
3322326KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.229610.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324630.0GU732463.1 Malus x domestica AP2 domain class transcription factor (AP2D39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028966190.10.0ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD34e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A498KEX90.0A0A498KEX9_MALDO; Uncharacterized protein
STRINGXP_008362954.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]