PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000643230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 308aa MW: 34825.9 Da PI: 6.3416 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.9 | 1.8e-29 | 40 | 124 | 16 | 100 |
DUF260 16 CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +ap+fp +qpk f+n+h+l+G++n++k+lk++++e+re+am+s++ye++++a+ Pv G++g+i++l+ ql+q+++el +++++ MDP0000643230 40 ALFAPHFPPDQPKLFQNAHRLYGVANIMKILKQVHPEKREEAMRSIIYESNMCAKFPVTGCMGIINQLTFQLQQAQEELRYVRTH 124 579****************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.389 | 24 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-26 | 40 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MKETIVIXXP KRKKTCXLME AQAKPVLRAN TKDESVLRTA LFAPHFPPDQ PKLFQNAHRL 60 YGVANIMKIL KQVHPEKREE AMRSIIYESN MCAKFPVTGC MGIINQLTFQ LQQAQEELRY 120 VRTHLAICKD QCQYRMPXSP QHYSCPSSQL QLGIPTNPDV AALTLYQQHQ YPYQYASGGS 180 GGTPWVANEY LANGLNGVYI DENDNMVKPX RFQHPYYDDN XVEQLMAIQS NLVPSQAFPI 240 HQEMDVPHDY DDIPFDTIAD DRQSYIESKE ACESSAESSF KGTQSIEHVS QNDLKSAAAC 300 FSLTSVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-18 | 37 | 125 | 23 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-18 | 37 | 125 | 23 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008348215.2 | 0.0 | LOB domain-containing protein 27-like | ||||
TrEMBL | A0A498J2U5 | 0.0 | A0A498J2U5_MALDO; Uncharacterized protein | ||||
STRING | XP_008348215.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-26 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000643230 |