PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000640034
Common NameSPMdDELLA1b
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 636aa    MW: 69748.2 Da    PI: 5.1636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000640034genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.91.3e-1362676261374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv+ L++cAeav++++++la+al++++  la +++ +m+++a++f+eALa+r++r    +y    p++  +++ s+    +  f+e++P+lkf+h+
  MDP0000640034 267 LVHGLMACAEAVQQNNFNLAKALVTQIGYLAGSQAGAMRKVATFFAEALAHRIFR----VY----PQPPIDHSFSDM--LQMHFYETCPYLKFAHF 352
                    6899***************************************************....44....444443334444..4446************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaIle++ g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+s++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ +
  MDP0000640034 353 TANQAILESLXGKTRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPASDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDAS 448
                    ************************************************************************************************ PP

           GRAS 193 eLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +L+++p   E++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqea+hn++ F++rf e+l+yys+lfdsle +   +++++++++
  MDP0000640034 449 MLELRPseAESVAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEILTVVEQEANHNGPVFMDRFNESLHYYSTLFDSLEGS---ANSQDKVMS 537
                    *****988999*********************....**********************************************99...599999*** PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++lg++i+nvvaceg +r+erhetl +Wr+r+++a F pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  MDP0000640034 538 EVYLGKQICNVVACEGLDRVERHETLTQWRARFDSADFVPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 626
                    ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.0E-3651118IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.2E-3451124No hitNo description
PROSITE profilePS5098566.124241605IPR005202Transcription factor GRAS
PfamPF035144.6E-134267626IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MKGEHQIHQL NQYPLPQQHP DPSMASASAG GGFGKAKMWE DESQRMDGGM DELLAVLGYK  60
VRSSDMADVA QKLEQLEEFM GCAQEDGLSQ LASDTVHYNP SDLSTWLETM ISEINVPPPN  120
FDPLMGGAVA GIQLSQQQVQ LVDDPFLAPA ESSITTVDFP DHRKSKSMST SPTQNVFEDC  180
NSSSSYYDFK SIPGNAVFTK TRLDSSSREP KRLKSSSGSS PSDLLFNRPA ASSLPQPQQP  240
ISLPAPAESS STRPALLVDS QENGVRLVHG LMACAEAVQQ NNFNLAKALV TQIGYLAGSQ  300
AGAMRKVATF FAEALAHRIF RVYPQPPIDH SFSDMLQMHF YETCPYLKFA HFTANQAILE  360
SLXGKTRVHV IDFSMNQGMQ WPALMQALAL RPGGPPAFRL TGIGPPASDN SDHLQEVGWK  420
LAQLAETIHV EFEYRGFVAN SLADLDASML ELRPSEAESV AVNSVFELHK LLARPGAIEK  480
VLSVVKQMKP EILTVVEQEA NHNGPVFMDR FNESLHYYST LFDSLEGSAN SQDKVMSEVY  540
LGKQICNVVA CEGLDRVERH ETLTQWRARF DSADFVPVHL GSNAFKQASM LLALFAGGDG  600
YRVEENDGCL MLGWHTRPLI ATSAWKPSXN SVIAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6127462726380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.153060.0bud| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8341960.0HQ834196.1 Malus x domestica DELLA protein (GAI1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946762.10.0DELLA protein GAIP-B
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLH2EII70.0H2EII7_MALDO; Spur-type DELLA protein
STRINGXP_009351505.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein