PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000628484
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 356aa    MW: 38761.4 Da    PI: 6.4014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000628484genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-1862111255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  MDP0000628484  62 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAARAYDRAAIILYG 111
                    59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2162119IPR016177DNA-binding domain
PfamPF008479.2E-1262107IPR001471AP2/ERF domain
PROSITE profilePS5103222.41862119IPR001471AP2/ERF domain
CDDcd000188.14E-2162121No hitNo description
SMARTSM003803.0E-3862125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2962119IPR001471AP2/ERF domain
PRINTSPR003671.9E-106374IPR001471AP2/ERF domain
PRINTSPR003671.9E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEDQDRDSA AEAAPDHHLP QENSNKTTED NSTTASTATT ETTDNNNRKC KGKGGPENNK  60
FRYRGVRQRS WGKWVAEIRE PRKRTRKWLG TFSTAEDAAR AYDRAAIILY GSRAQLNLQP  120
SGSSSQNSTR GSSSSSSSSS SSTQTLRPLL PRPSGFGLTL PHLSSAHPVP LMASGFVPYG  180
VEVGLGVYPN VATAAAVAGG GATSSVRLNQ HPHHNNMLDQ DHPQDNINPL HQQLQQQQQV  240
VVQHFHHQYP ISLSDRSSTS YQYPNSSHDQ YQLQLHHQNN NNLECCSHDD VMNSLVGSGL  300
STEPMAVAPG CSDISMGGVG PISPSMWPLT SEEECVPSLW DYGDPFFLDL KGLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1963118359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8601150.0JQ860115.1 Pyrus pyrifolia ABI4 protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369406.10.0ethylene-responsive transcription factor ABI4
TrEMBLA0A498JM370.0A0A498JM37_MALDO; Uncharacterized protein
STRINGXP_008369406.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.18e-28ERF family protein