PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000622590
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 244aa    MW: 27769.3 Da    PI: 7.2169
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000622590genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34231142102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SF+RQLn+YgF+kv +++         weF +++F+kg+k++l++i
  MDP0000622590  23 FLLKTYMLVEDPATDDVISWNDDGSAFVVWQTAEFARDLLPTLFKHSNFSSFIRQLNTYGFRKVATNR---------WEFCNDKFRKGEKDQLCDI 109
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  MDP0000622590 110 RRRKA 114
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-3616106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.17E-3218112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5119112IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEGVCDEQKG LLEYVRKSSP PPFLLKTYML VEDPATDDVI SWNDDGSAFV VWQTAEFARD  60
LLPTLFKHSN FSSFIRQLNT YGFRKVATNR WEFCNDKFRK GEKDQLCDIR RRKAWATKPQ  120
PINNAVTEKA GAAALLPNEF DEDQRSSSTS SSSEFCSLVD ENKRLKQENG VLSSELMSMK  180
QKCNELLHLV ARYGDSAEKE EEDNERVPKL FGVRLEVAGE RERKRKRAEI SKNASVLLSQ  240
ACK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B3e-23231124104Putative transcription factor
5d5x_B3e-23231124104Putative transcription factor
5d5x_E3e-23231124104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387308.10.0heat stress transcription factor B-3
SwissprotO222309e-68HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A498IGF21e-180A0A498IGF2_MALDO; Uncharacterized protein
STRINGXP_008387308.11e-180(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-65heat shock transcription factor B3