PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000611302 | ||||||||
Common Name | DOF1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Dof | ||||||||
Protein Properties | Length: 303aa MW: 33528.8 Da PI: 7.7739 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 129 | 1.4e-40 | 39 | 100 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss MDP0000611302 39 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 100 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.6E-34 | 41 | 97 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-27 | 42 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.646 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 45 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDPASGQQQH QEMSAQSLDM LVCSKSQQQQ QDRKPRPQPE QALKCPRCDS TNTKFCYYNN 60 YSLSQPRYFC KSCRRYWTKG GTLRNVPVGG GCRKNKRSSS AKRAQDQPLT PNSNPLPALG 120 YDSNDLTLAF ARLQRQQSCG GQLGFDDHDH ISLLGNPTNA PDHNILGNPN SAPRFLDALR 180 TGFLETHNGN FQNLYNYGYG NGNLGEVDNC GGGMGIHHPF EEGTTNSTTT AVTVTTMKQE 240 QFNAQSESSN RVLWGFPWQM NGGDHHSNMV GNSNHEYDSG RESWNGIASS WQHGLLHTTP 300 LV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11080 | 0.0 | bud| fruit| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008385262.1 | 0.0 | dof zinc finger protein DOF2.1-like isoform X1 | ||||
TrEMBL | D9ZIX6 | 0.0 | D9ZIX6_MALDO; DOF domain class transcription factor | ||||
STRING | XP_008385262.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5026 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 1e-50 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000611302 |