PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000611204
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28362.8 Da    PI: 9.3228
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000611204genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-1755104150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                    k++e+k +r+vtfskR+ g++ K  ELSvL++ae   i++s++gk++ + 
  MDP0000611204  55 KKVEDKNKRHVTFSKRKRGLFNKTAELSVLTGAETGAIVVSNSGKVFCFV 104
                    6789******************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.63747107IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-2347106IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-154969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-2249126IPR002100Transcription factor, MADS-box
PfamPF003197.2E-1856103IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-156984IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-1584105IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MRIVGDQMGF GGGDDVIDLR NFLLNVLPFG NFRITNKDTE NGKKESKSRR SVEIKKVEDK  60
NKRHVTFSKR KRGLFNKTAE LSVLTGAETG AIVVSNSGKV FCFVSPSPDA IIERYYSKKQ  120
IQDYEKASRL LKEEKILKGG KKSTSNNNGG DEGGCSYGWW ERPIGMMSSL EELEEYREAX  180
YKLKHNVEVR TNQLIRETTX SDHFSSLLSM DDTWSPPKLS QGQGCIGXXD VNFIISCXXN  240
VKKCLYQNVL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A1e-16391221091PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B1e-16391221091PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963356.11e-124agamous-like MADS-box protein AGL29
TrEMBLA0A498J2S11e-123A0A498J2S1_MALDO; Uncharacterized protein
STRINGXP_008380804.11e-141(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1658149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-15MIKC_MADS family protein