PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000610922
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 412aa    MW: 46127.4 Da    PI: 8.4383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000610922genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.52.8e-07232254123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C+ Cgk F+r  nL+ H+r H
  MDP0000610922 232 HYCHVCGKGFKRDANLRMHMRAH 254
                    68*******************99 PP
2zf-C2H211.30.0011365380621
                    TTEEESSHHHHHHHHH CS
        zf-C2H2   6 CgksFsrksnLkrHir 21 
                    Cg++Fsrk+ L+ Hi 
  MDP0000610922 365 CGTTFSRKDKLMGHIA 380
                    **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-5230254No hitNo description
Gene3DG3DSA:3.30.160.608.9E-6232254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0069232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.822232259IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
SMARTSM0035565295328IPR015880Zinc finger, C2H2-like
SMARTSM0035522333355IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MISEAPSDYL QPMLQQQHHQ GLQNYEDPHR VSSFVLEPNS PTSSSGPENH STSLLYNLSV  60
LKEKVHQAKS LVSVLISPDH HQSQPHESTT IAVSNVIQEI LVTASSMMFT CQQMALGSAT  120
TPGNNINITT TSTTTAQGLS DHRDHNRTSQ TNFGIGDSSK IDPSAFYSTH EQTIDWFSDS  180
FNDCTTRDTS TSIVNHCSHN DRYVQGKELP VSWKNYDIIE LDVSDLLAKY THYCHVCGKG  240
FKRDANLRMH MRAHGDXYKT SVALSNPLKK NNNNNDSAGG IDGNTESSTK LPRKYSCPQE  300
GCKWNQKHAK FQPLKSMICV KNHYKRSHCP KMYVCKRCNR KQFSVLSDLR THEKHCGDLR  360
WQCSCGTTFS RKDKLMGHIA LFTGHMPVMI TSLTRSGKVD QQSHGSQMQL G*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377895.20.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-106STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A498INF80.0A0A498INF8_MALDO; Uncharacterized protein
STRINGXP_008377895.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-107C2H2 family protein