PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000598367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 262aa MW: 28978.7 Da PI: 5.8717 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ + + +G+g +W + +++ g++R++k+c++rw++yl MDP0000598367 14 RGPWSPEEDAALKSYLESHGTGgNWILLPKKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.121 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.31E-19 | 15 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.89E-9 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-7 | 66 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRTPCCDKD NVKRGPWSPE EDAALKSYLE SHGTGGNWIL LPKKAGLRRC GKSCRLRWLN 60 YLRPDIKHGS FTEEEDSIIC SLYNQMGSRQ KKLXVLGGKV KNISSKEREP TITNNAIFSG 120 IRKTEEPQDP AFSTFQPATL QTLSDVNSGL NAYNQTXSLN PDQLYSPKFL GFSNFGASSR 180 RSFSTTVSLS QEGSSVSDSS SIAGNGYLDQ DSWFCMDYGY GLAYDNNVNY YGMCFEKTTS 240 EAVPSGCTDL GELFQAEIYN Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-12 | 14 | 96 | 7 | 87 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008393672.2 | 0.0 | transcription factor MYB87-like | ||||
TrEMBL | A0A498HTW4 | 1e-178 | A0A498HTW4_MALDO; Uncharacterized protein | ||||
STRING | XP_008393672.1 | 1e-173 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-50 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000598367 |