PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000595671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 19229.4 Da PI: 9.639 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00088 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H MDP0000595671 41 FVCKTCDREFPSFQALGGHRASH 63 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H MDP0000595671 92 HECPICGLEFTVGQALGGHMRRH 114 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.92E-9 | 39 | 114 | No hit | No description |
Pfam | PF13912 | 2.0E-12 | 40 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.473 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.8E-10 | 92 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.974 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.066 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MKRSRQDETL DMVNCLMLLS KVGEPDSSPI KYENSKNDRV FVCKTCDREF PSFQALGGHR 60 ASHKKPKLMP GGAVDLLHLA EFPGSPVKPK KHECPICGLE FTVGQALGGH MRRHRDVIQA 120 AAVRAQPSPP MPVLKKSNSS KRVSCLNMEL NLDLHLAPPG HHQYDLTKLQ MIS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11787 | 0.0 | fruit| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008357752.1 | 1e-126 | zinc finger protein ZAT12 | ||||
Swissprot | Q42410 | 4e-37 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A498K832 | 1e-124 | A0A498K832_MALDO; Uncharacterized protein | ||||
STRING | XP_008357752.1 | 1e-125 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 1e-39 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000595671 |