PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000580356

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WOX

Protein Properties

Length: 329aa MW: 36125 Da PI: 7.4632

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000580356	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.1e-20	27	88	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psae+++++++kl +++ ++V++WFqN++a+e++ MDP0000580356 27 STRWTPTTDQIKILKDLYYNngIRSPSAEQIQRISAKLrqfgKIEGKNVFYWFQNHKARERQ 88 58***************8567***********************************97 PP
2	Wus_type_Homeobox	113.2	1.3e-36	26	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++QikiL++ly+ +G+r+P++e+iqri+a+L+++Gkie+kNVfyWFQN+kaRerqk+ MDP0000580356 26 SSTRWTPTTDQIKILKDLYYnNGIRSPSAEQIQRISAKLRQFGKIEGKNVFYWFQNHKARERQKK 90 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-12	20	93	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.544	23	89	IPR001356	Homeobox domain
SMART	SM00389	2.9E-5	25	93	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-7	28	88	IPR009057	Homeodomain-like
CDD	cd00086	1.64E-7	28	90	No hit	No description
Pfam	PF00046	2.6E-17	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDPQQXPNEV QDGGNRQGGG IMCRQSSTRW TPTTDQIKIL KDLYYNNGIR SPSAEQIQRI 60 SAKLRQFGKI EGKNVFYWFQ NHKARERQKK RFTSSSAPDH HHHAAPPVPA VPPESNNIRQ 120 RSSGVGIDIN ATAAAAYEQA PINHHXKYSN ISAPPAGFSS ASSSSVGVNV SVGAQMGNYG 180 YGSIAMEKSF RECSISSGGS TSTGHVGGSN YNTFNHNYGS WVGVDPYSSP YTIFDKKSSS 240 KPVFGDQENM TEEEYYNLQA SQEIETLPLF PMHGEDIHGF GNIKSSSMDG YYSGWYRSDG 300 GNDGGSRTSL ELSLNSYGHM THDYFRSY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269\|PubMed:12208843}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT998806	0.0	KT998806.1 Pyrus betulifolia wox transport 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008337001.2	0.0	protein WUSCHEL-like
Swissprot	Q8LL11	6e-81	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A498KDN5	0.0	A0A498KDN5_MALDO; Uncharacterized protein
STRING	XP_008337001.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8241	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	2e-50	WOX family protein

Link Out ? help Back to Top
Phytozome	MDP0000580356

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]