PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000575908
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 603aa    MW: 66395.3 Da    PI: 4.8982
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000575908genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.33.4e-1112336022374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++Ll+cA+ ++++d+ +a + L rl+e  s +gdp++R+a+yf+eAL++r++    +  k++++  + ++  ++ + ++k++++++P+ kf+hlt
  MDP0000575908 233 LKALLDCAR-LTESDTDRAVKSLIRLRESISDHGDPTERVAFYFAEALHNRVSV--LQSEKTFTT--AYDTPCEDFTLSYKALNDACPYSKFAHLT 323
                    689******.566799************************************98..333333333..3333489999******************* PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    aNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p s+Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ + +++++l+
  MDP0000575908 324 ANQAILEATERATKIHIVDFGIVQGVQWAALLQALATRSTGKPvSIRISGIPAPSLGdsPAASLFATGNRLREFAKLLELNFEFEP-ILTSVNELD 418
                    ***************************************77777**********999889999***********************.6999***** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     + +r++p+EalaVn++lql++lld++ +  +   + Lkl ksl+P++v++ e ea++n+ +F+ rf +al+yy+alf+sle +l r+s er kvE
  MDP0000575908 419 ESCFRFEPEEALAVNFMLQLYNLLDDKPAAVH---SALKLAKSLNPQIVTLGEYEANLNRVEFASRFKNALKYYTALFESLEPNLTRDSPERLKVE 511
                    ************************99999888...9************************************************************ PP

           GRAS 287 rellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                    r llgr+i  +v  e++  +rer e +e+W+  +e++GF++v+ls++ ++qak ll +++ s  y+++e+   ++ l W++ pL++vS+Wr
  MDP0000575908 512 RLLLGRRIGGLVGPEQSGtKRERFEDKEQWKYLMESSGFESVALSHYSVSQAKILLWNYNySSLYSLKESPPGFLsLSWSEVPLFTVSSWR 602
                    *************9998779****************************************9999****99877777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.295206580IPR005202Transcription factor GRAS
PfamPF035141.2E-108233602IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QKQQQEQQQQ QHHQQPPLGA FSLTPWPNNT HHTLAQSPNL  60
GFGLTGSGFS DPFQMPGGSD AGGEPGFPFP NLDHHATGFR FSDLGGGGAA EFDSDEWMDS  120
IIGGGDSTDS SNLPYACDTW QGNNADFGLY GADPFQPHCP SRLSNTCSPP SDLNRVIFSE  180
TQNQLATWTP PPPQQLHQVS IKESKSADHP SLKNDAVGVS LGSPEIESAP PLLKALLDCA  240
RLTESDTDRA VKSLIRLRES ISDHGDPTER VAFYFAEALH NRVSVLQSEK TFTTAYDTPC  300
EDFTLSYKAL NDACPYSKFA HLTANQAILE ATERATKIHI VDFGIVQGVQ WAALLQALAT  360
RSTGKPVSIR ISGIPAPSLG DSPAASLFAT GNRLREFAKL LELNFEFEPI LTSVNELDES  420
CFRFEPEEAL AVNFMLQLYN LLDDKPAAVH SALKLAKSLN PQIVTLGEYE ANLNRVEFAS  480
RFKNALKYYT ALFESLEPNL TRDSPERLKV ERLLLGRRIG GLVGPEQSGT KRERFEDKEQ  540
WKYLMESSGF ESVALSHYSV SQAKILLWNY NYSSLYSLKE SPPGFLSLSW SEVPLFTVSS  600
WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1452316023375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.13520.0bud| fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028949970.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLM5VW270.0M5VW27_PRUPE; Uncharacterized protein
STRINGXP_008338096.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein