PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000573176
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 281aa    MW: 29260.1 Da    PI: 8.389
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000573176genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041112134123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k Fs+   L  H  +H
  MDP0000573176 112 YKCSVCDKGFSSYQALGGHKASH 134
                    9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-12112136IPR007087Zinc finger, C2H2
SMARTSM003550.011112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993112139IPR007087Zinc finger, C2H2
SuperFamilySSF576673.35E-9112134No hitNo description
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576673.35E-9163190No hitNo description
PfamPF139123.6E-13168192IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411168190IPR007087Zinc finger, C2H2
SMARTSM003550.19168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MALQALNSPT AAGASPFPFE NEASSLGYAE PWTKRKRSKR PRLDTPHSEE EYLAICLIML  60
ARGNRGGDLA STTATAATAT KETNSAASHQ IITQSPSMEP STSASPPVKL SYKCSVCDKG  120
FSSYQALGGH KASHRKGSAA GSAIXGPSTS STTTTSAAAT ATASGRSHEC SICHKSFPTG  180
QALGGHKRCH YDGGAAGSTA TTTATTSAIT SSEGVGSTSH AVSHGHPRET FDLNLPALPE  240
FSRDFFISGE DEVESPHPTK KPRLLLMMKP KTETSQDQQN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2793101e-107AY279310.1 Malus x domestica enolase-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393741.20.0zinc finger protein ZAT10-like
TrEMBLA0A498HTG00.0A0A498HTG0_MALDO; Uncharacterized protein
STRINGXP_008393741.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-50salt tolerance zinc finger