PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000571121
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SRS
Protein Properties Length: 362aa    MW: 39676 Da    PI: 7.3513
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000571121genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702215.61.2e-661262824154
         DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.......kskkqsalsstkls 92 
                    g asCqdCGnqakkdC h+RCRtCCksrgfdC thvkstWvpa+krrerqqq++ +++++ ++++++++++ +           ++ s+  s ++ 
  MDP0000571121 126 GXASCQDCGNQAKKDCIHMRCRTCCKSRGFDCPTHVKSTWVPASKRRERQQQHHHQQQDHMQHHHHQQQQQFQVIrgenskrLRENPSSKPSRRIL 221
                    6789**********************************************9999988888777744444433322333344345556666666777 PP

         DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                    ++++++el++ ++P+evss+avfrcv+vs++d+ e+++aYqtav+i+Gh+fkGiLydqG+e+
  MDP0000571121 222 TNTNTSELDVVNFPPEVSSPAVFRCVKVSAIDE-EDQYAYQTAVNIAGHLFKGILYDQGPES 282
                    777788999999*******************97.579**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-63127281IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.6E-28129171IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.4E-26234280IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAGFFSLGRG GSDDQHNSNN PPPPDHHHRH QIAPETLFWY KNEDVANQPY KGFELWQQQE  60
QLLQLQTQPS QRLYQPHPHH HQDLYASAAA LGVGPSSRGS DDTSSSRSAA AAFTXMXSSS  120
GGGSGGXASC QDCGNQAKKD CIHMRCRTCC KSRGFDCPTH VKSTWVPASK RRERQQQHHH  180
QQQDHMQHHH HQQQQQFQVI RGENSKRLRE NPSSKPSRRI LTNTNTSELD VVNFPPEVSS  240
PAVFRCVKVS AIDEEDQYAY QTAVNIAGHL FKGILYDQGP ESPNYNMNMA AETSSAGGVN  300
FQPLNLVVGA TTAVNTASID GGGGHEGVAV AGSTIVIDPS SLYPAPINTY MGTQFFLPPR  360
S*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In germinating seeds, first detected at about 48 h after imbibition. In young seedlings grown in continuous light, present in the root/shoot transition zone, in the apex, and in the apical region of the cotyledons. Later observed in lateral root primordia and in emerging lateral roots, particularly in the root tips, as well as in the shoot apex and in the new leaves, especially in the apical and lateral hydathodes. In adult plants, accumulates in lateral root tips, lateral root primordia, and axillary shoot primordia. In flowers, expressed in the style and stigmatic surface of the pistil and in the receptacle (base) of the flower throughout the development of the pistil until anthesis and later in the silique. Fades out after fertilization. {ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
UniprotTISSUE SPECIFICITY: Expressed in young organs such as shoot apices and root tips. Present in roots, stems, flowers, leaves, hydathodes and siliques. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338021.20.0protein SHORT INTERNODES-like
SwissprotQ9XGX03e-83SHI_ARATH; Protein SHORT INTERNODES
TrEMBLA0A498HUD70.0A0A498HUD7_MALDO; Uncharacterized protein
STRINGXP_008338021.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.14e-66Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]