PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000562305

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 301aa MW: 32876 Da PI: 8.1465

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000562305	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.3	6.5e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC+++Cv+apyfp ++p++fanvhk+FGasnv k+l++l+ ++r+da++sl+yeAear+rdPvyG+vg+i+ lqq+l+q++a+l MDP0000562305 8 PCAACKFLRRKCTPECVFAPYFPPDNPQRFANVHKVFGASNVAKILNELSASQRDDAVNSLAYEAEARLRDPVYGCVGLISLLQQRLKQVQADLFN 103 7********************************************************************************************988 PP DUF260 97 lkee 100 +k+e MDP0000562305 104 AKKE 107 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.851	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-43	8	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSSSSNSPCA ACKFLRRKCT PECVFAPYFP PDNPQRFANV HKVFGASNVA KILNELSASQ 60 RDDAVNSLAY EAEARLRDPV YGCVGLISLL QQRLKQVQAD LFNAKKELAT YIGPQAMLSI 120 LQPPTYMAQQ LQGNASSSAG PPYSMSPMMG IPTAAASGQL MIRDPQQQQQ HQQIFEAQQL 180 AAAVAXREQQ EMFRSFDQSK QAMQQQAQDH LSGFTQMAGA VGNXVLPSLA XGFDSGPYHQ 240 IQPQRPHHNH RHQLQLQAQL LLQTQQPQGQ HXAQQSQQPQ LQAKPDPGEE GGGRSVGPSC 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	2	111	5	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	2	111	5	114	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008339798.2	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	5e-73	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	M5W6J8	1e-129	M5W6J8_PRUPE; Uncharacterized protein
STRING	XP_008339798.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-75	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	MDP0000562305

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]