PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000547254
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 303aa    MW: 33349.7 Da    PI: 8.216
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000547254genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1291.4e-402788263
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                   +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  MDP0000547254 27 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 88
                   7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.6E-342985IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-273085IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6463185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSTHSLDMLV GSKSQQQQQD RKPRPQPEQA LKCPRCDSTN TKFCYYNNYS LSQPRYFCKS  60
CRRYWTKGGT LRNVPVGGGC RKNKRSSSAA KRAQEQPLTP NSNPLPGLGY DSNDLTLAFA  120
RLQRQQSCGG QLGFDDHNIL GNPNSAPGFL DGLRTGFLES HNGNFQNLYN YGFGNGNGNL  180
GEVEDCGGGM GIHHPFEEAT TTSTTNAVTV TTMKQELFNA QSESSNRVLW GFPWQMNGGD  240
HHANMVGNGN HEYDSGRESW NGIASSWQHG LVHTTPLVLD TNSIFYKFNA SSKSFDISSL  300
NN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.110801e-174bud| fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}.
UniprotTISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358220.10.0dof zinc finger protein DOF2.1-like
SwissprotQ8LE431e-54DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLA0A498KFZ40.0A0A498KFZ4_MALDO; Uncharacterized protein
STRINGXP_008358220.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.13e-48Dof family protein