PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000546502

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TALE

Protein Properties

Length: 711aa MW: 78002.2 Da PI: 7.362

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000546502	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.6e-09	406	443	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + MDP0000546502 406 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 443 554459******************************88 PP
2	BELL	121.4	3.9e-39	270	341	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk kL+++l+eVd+rY+qy+ q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi MDP0000546502 270 ERQEIQMKKGKLINMLDEVDQRYRQYHRQMQMVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITNQI 341 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.2E-64	196	339	IPR006563	POX domain
Pfam	PF07526	2.8E-50	201	338	IPR006563	POX domain
PROSITE profile	PS50071	12.195	384	447	IPR001356	Homeobox domain
CDD	cd00086	6.68E-12	387	448	No hit	No description
SMART	SM00389	5.3E-9	387	451	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-17	388	453	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-28	390	453	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	404	443	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MAAYFHHHGG NSSEIQASSD GALQTLVLMN PGYVQYSDTP PPPQQQQQQQ QPQPPSAATN 60 LVFLNSAPNS LTHHPSTLSH APPSHHQQFL GIPLTQDPNG NSSLSMHHPH HDISALHAFM 120 PRIQTQYALW NSIDPAASTR DTPRSQQGLS LSLSSQQPGF GSFQETSAER EVPSGEDIRV 180 SSGSNSSASG VTNGVSGMQS VLLSSKYLKA AQELLDEFVN VGNGMRTELP KKGNGQQSKA 240 AAESSMAEAR DGSVGXEGSG KRAAELSTAE RQEIQMKKGK LINMLDEVDQ RYRQYHRQMQ 300 MVISSFEQAA GIGSARTYTA LALQTISKQF RCLKDAITNQ IRSANKSLGE EDSVGGKIEG 360 SRLKYVDHQL RQQRALQQLG MVQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKH 420 MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEAKEQ EKNGSSEKMS KSNEDSASKS 480 TAPQDTENQT TSTFNSKQEN SVNHNVATHP SRSISTPSTS PTNMVRNQSG FTLIGSSELD 540 GITQGSPKKP RSTEIMHSSN SGVPCMNMES QEVSNEQVSM KFGNERQGRD GYSFMGGQTN 600 FIGNFGQYPI GEIGRFDADQ FTPRFSGNGV SLTLGLPHCE NLSLSGAHHH QTFLPNQNIQ 660 LGRRVDIGET NDQFGAINTS APHSSAAAFE NIDIQNRKRF VAQLLPDFVA *

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MAAYFHHHGG NSSEIQASSD GALQTLVLMN PGYVQYSDTP PPPQQQQQQQ QPQPPSAATN  60
LVFLNSAPNS LTHHPSTLSH APPSHHQQFL GIPLTQDPNG NSSLSMHHPH HDISALHAFM  120
PRIQTQYALW NSIDPAASTR DTPRSQQGLS LSLSSQQPGF GSFQETSAER EVPSGEDIRV  180
SSGSNSSASG VTNGVSGMQS VLLSSKYLKA AQELLDEFVN VGNGMRTELP KKGNGQQSKA  240
AAESSMAEAR DGSVGXEGSG KRAAELSTAE RQEIQMKKGK LINMLDEVDQ RYRQYHRQMQ  300
MVISSFEQAA GIGSARTYTA LALQTISKQF RCLKDAITNQ IRSANKSLGE EDSVGGKIEG  360
SRLKYVDHQL RQQRALQQLG MVQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKH  420
MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEAKEQ EKNGSSEKMS KSNEDSASKS  480
TAPQDTENQT TSTFNSKQEN SVNHNVATHP SRSISTPSTS PTNMVRNQSG FTLIGSSELD  540
GITQGSPKKP RSTEIMHSSN SGVPCMNMES QEVSNEQVSM KFGNERQGRD GYSFMGGQTN  600
FIGNFGQYPI GEIGRFDADQ FTPRFSGNGV SLTLGLPHCE NLSLSGAHHH QTFLPNQNIQ  660
LGRRVDIGET NDQFGAINTS APHSSAAAFE NIDIQNRKRF VAQLLPDFVA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	393	451	5	63	Homeobox protein Meis2
3k2a_B	5e-16	393	451	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.8046	0.0	bud\| fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009348973.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_009348980.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_009348985.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018501298.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018501302.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A498I2D6	0.0	A0A498I2D6_MALDO; Uncharacterized protein
STRING	XP_008360598.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-157	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	MDP0000546502

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]