PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000542633 | ||||||||
Common Name | AP2D5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25062.8 Da PI: 8.5911 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.9e-20 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa++ l+g MDP0000542633 30 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARILRG 79 69*******.**********883....5***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.011 | 30 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-34 | 30 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-12 | 30 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 30 | 89 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.39E-17 | 30 | 89 | No hit | No description |
PRINTS | PR00367 | 8.9E-11 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MRRGRGAATR PAAPPAEPTG SRPCIXKEVR YRGVRKRPWG RFAAEIRDPW KKTRVWLGTF 60 DSAEDAARAY DAAARILRGP KAKTNFQISC AYPTFYNNPT DPAIEAKLFG SGYGFQDHPA 120 VDPQRPASSS LSSTVESFSG PRPPLQSTTV AAELTRRKRQ PRTPPVVPED CHSDCDSSSS 180 VVEDDGDFVA SSSFRKAPLP FDLNFPPLDV DGEMGGGVDG QDLRCTALCL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-19 | 20 | 86 | 4 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30326 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732429 | 0.0 | GU732429.1 Malus x domestica AP2 domain class transcription factor (AP2D5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315931.1 | 1e-166 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 3e-56 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | D5L0Y9 | 1e-165 | D5L0Y9_MALDO; AP2 domain class transcription factor | ||||
STRING | XP_008359254.1 | 1e-166 | (Malus domestica) | ||||
STRING | XP_008385843.1 | 1e-166 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 2e-29 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000542633 |
Publications ? help Back to Top | |||
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