PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000537425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 102aa MW: 11594.3 Da PI: 11.2891 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.2 | 4.7e-09 | 17 | 51 | 18 | 55 |
AP2 18 eIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 e rdp+ + r++lg+f taeeAa+a+ + ++k++g MDP0000537425 17 EFRDPR----KgVRVWLGTFNTAEEAARAYYREARKIRG 51 567763....349******************99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.751 | 1 | 59 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-17 | 7 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.95E-18 | 9 | 60 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-19 | 9 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-14 | 9 | 60 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-4 | 22 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MCKKRSQLRG RGRTSTEFRD PRKGVRVWLG TFNTAEEAAR AYYREARKIR GKKAKVNFPN 60 EDDHLSAKTY LRNPNVSTQK LFNSSIYSFG KQTPIILGIG I* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12917 | 2e-88 | bud| cell culture| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732448 | 1e-85 | GU732448.1 Malus x domestica AP2 domain class transcription factor (AP2D24) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959391.1 | 9e-41 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 5-like | ||||
Swissprot | Q6K7E6 | 1e-20 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | D5L108 | 1e-31 | D5L108_MALDO; AP2 domain class transcription factor | ||||
STRING | XP_008392325.1 | 1e-44 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21074 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 9e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000537425 |