PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000526864
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 602aa    MW: 66000 Da    PI: 7.032
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000526864genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.31.5e-27292346156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  MDP0000526864 292 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 346
                    5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.152289348IPR017930Myb domain
SuperFamilySSF466895.2E-18290349IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-26290349IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-26292346IPR006447Myb domain, plants
PfamPF002497.2E-8295344IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MNHNAAARFT IRQGEIAKPQ INQPHPRHIP FELSGWQSLP GLLLGPSLSL GLAYAGPYPS  60
AYLALFHPQF TGEGHHHHQL KDEKQLGDDG DVESSFAFNG GNNTVLDFPE FSGGMGMGNL  120
LDSIDFDDLF XGIHDGDVLP DLEMDSEILD FSVPAPADDI NTKTTPPPPS KEEEEVADDY  180
YNTTKTRTTS SKVEDQEEED LHGHGEVAAA AVSITSTNNN SGLNQNYSSS STTTTPDHRG  240
DQEIVSKRDD INQIRAAHRP SSGSTRRKSA DHKLATKSSP AAQSKKSHGK RKVKVDWTPE  300
LHRRFVQAVE QLGVDKAVPS RILELMGIDC LTRHNIASHL QKYRSHRKHL LAREAEAASW  360
TQRRQMYGAV AAAGGGAGAK SRRDXMMMNN PNWLNAPTMG FPSITSTTPP PMHHAQHYHQ  420
LIRPLHVWGH PTMDQSMMHT WPPKHHLPHH FPSPVLPPPP PAPAHAWPPG PPPPPDASYW  480
HHPHSHHQRA LDSPTPGAPC FPRQQLXAPT QRFPTPPVPG IPPHAMYKVE PAGIAAPTPP  540
QSGPHLLLDF HPSKESIDAA IGDVLSKPWL PLPLGLRPPA TDTVMVELQR QGVQKFPPSC  600
X*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15289344257ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.256842e-79leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342884.20.0probable transcription factor GLK1 isoform X1
TrEMBLA0A498HB960.0A0A498HB96_MALDO; Uncharacterized protein
STRINGXP_008342884.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.15e-77GBF's pro-rich region-interacting factor 1