PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000522931
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 417aa    MW: 46856.8 Da    PI: 4.943
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000522931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2982.4e-91434141374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkf 93 
                    lve Ll+ Ae v  ++ e+a +lL+r   ++s++g+p++R++++f eAL +++ r++ +++ ++   +++ + + + ++  ++    +   P+ ++
  MDP0000522931  43 LVEFLLASAEKVGYQQYERAGNLLKRCDSRSSSTGNPVERVVHFFSEALLEKIDRETGRVAPKVlGNKQSFDVDIAMKIPNDTSltCQIKLPFGQV 138
                    57889**************************************************666666554244444444444444444333455568***** PP

           GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +++  qaI+e v+++++vH+iD++i +G+QW  L+qaLasR   +   l+iT+vg    + +e++eetg+rL +fA+++++pf+f++++++++ d
  MDP0000522931 139 VQFAGIQAIVENVAEAKKVHVIDLEIRNGVQWTGLMQALASRYdCPLELLKITAVGT---TCRESVEETGKRLGSFAQTMNLPFSFKIVMVEDMLD 231
                    ******************************************9445569********...69********************************** PP

           GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                    l+ ++++++++E++aV + ++l +++ ++  les    v+k++k+++P v vv+e ea+hns+ F++rf++al y++a+fd+le+ + r++ +r+ 
  MDP0000522931 232 LKEDMFELDSEETVAVYSEFALRSMVPKPDRLES----VMKVIKNIRPCVTVVTEVEANHNSPVFVTRFIDALFYFAAFFDCLETCIQRDDPNRSI 323
                    *************************977777777....********************************************************** PP

           GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +E +++g  i+n+va+eg+er+ r+ +   Wr+ + + G+++++ls++   qa+l+l++++ ++  +++ + ++l+lgWk+ pL s+S W+
  MDP0000522931 324 LESMYFGTGIRNIVANEGEERNIRNVKIDVWRAFFARYGMEEIELSSSSLYQADLILKNFPyGNSCTLNMDGKCLLLGWKGTPLHSLSLWK 414
                    *************************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.51317393IPR005202Transcription factor GRAS
PfamPF035148.3E-8943414IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MRVAGARFIQ TYSQVSDVPS MLSHPFGSSF SGLSDEEARD VELVEFLLAS AEKVGYQQYE  60
RAGNLLKRCD SRSSSTGNPV ERVVHFFSEA LLEKIDRETG RVAPKVLGNK QSFDVDIAMK  120
IPNDTSLTCQ IKLPFGQVVQ FAGIQAIVEN VAEAKKVHVI DLEIRNGVQW TGLMQALASR  180
YDCPLELLKI TAVGTTCRES VEETGKRLGS FAQTMNLPFS FKIVMVEDML DLKEDMFELD  240
SEETVAVYSE FALRSMVPKP DRLESVMKVI KNIRPCVTVV TEVEANHNSP VFVTRFIDAL  300
FYFAAFFDCL ETCIQRDDPN RSILESMYFG TGIRNIVANE GEERNIRNVK IDVWRAFFAR  360
YGMEEIELSS SSLYQADLIL KNFPYGNSCT LNMDGKCLLL GWKGTPLHSL SLWKFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-417341433375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947847.10.0DELLA protein RGL1-like
TrEMBLA0A192ADG30.0A0A192ADG3_PYRPY; DELLA protein RGL1
STRINGXP_008351161.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.18e-64RGA-like 2