PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000522009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 431aa MW: 47118.1 Da PI: 8.5511 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.6e-13 | 112 | 156 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Iar ++Rt+ q+ s+ qky MDP0000522009 112 PWTEEEHRMFLIGLQKLGKGDWRGIARSYVTTRTPTQVASHAQKY 156 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.8 | 105 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.09E-17 | 107 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.7E-18 | 108 | 160 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.7E-10 | 109 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-11 | 109 | 155 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-10 | 112 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.91E-9 | 112 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MTRRCSHCSN NGHNSRTCPT RVGSSSSSPS LGGGVKLFGV RLTDGSIIKK SASMGNLSSA 60 AAHYHSSSPN PDSPSSDQLH DPVHVPDGYL SDDPAHASSS VNRRGDRKKG TPWTEEEHRM 120 FLIGLQKLGK GDWRGIARSY VTTRTPTQVA SHAQKYFIRQ SNATRRKRRS SLFDMVPDMA 180 PPLPEEQIFL PSSWEGDSED ANSLPSLNLS LSSESKPMET THEETVIEHD HEPAMGSNGF 240 PPMAPPYVPA YMSYPWPYWA PSAGPFREMV GEPSRQPVLR PIPIVPKEPV NVDALGMSQL 300 SLGETERGLK EPSPLSLKLL GEPSRQSAFH PNAPASEPDL SKGKSSAIQA RPANSAAPVR 360 PCHSAITHYA DEMTPLPCPL LCHLLHLPHL FSALYANTKK PPYLHPCRVC RIFQVDRLKA 420 YSNNTYTVPT * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12294 | 0.0 | fruit| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ074475 | 0.0 | DQ074475.1 Malus x domestica MYBR2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280790.1 | 0.0 | uncharacterized protein LOC103443746 | ||||
Swissprot | Q7XC57 | 1e-88 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | Q2LMD7 | 0.0 | Q2LMD7_MALDO; MYBR2 | ||||
STRING | XP_008380859.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7719 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16350.1 | 2e-77 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000522009 |
Publications ? help Back to Top | |||
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