PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000515760
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 302aa    MW: 34322.2 Da    PI: 6.5854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000515760genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000293557123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H++ H
  MDP0000515760 35 YECTFCKRGFTNAQALGGHMNIH 57
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-53161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.49E-63261No hitNo description
SMARTSM003550.00973557IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4683562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MESWRPRSPD TSSSDEDQVR DDDHDSGATT VKRSYECTFC KRGFTNAQAL GGHMNIHRKD  60
RAKAKQLISG TSSLNSNHYS NEDQYISMST SHHHQYSSAP IPSQGASGYY PVLDQMNYQM  120
YFQPNGSNPR IPYGYDHDDS SVGSRSQSLG MNQELWGANL SLRLEDDEFR RGVRSNDEVD  180
LELRLGNGSM VPIKLKHTNY LPRXAFFALI LXRYKLFGLI DGTEPCPAPL LPDQSLNPSF  240
EXWFQKDQNL LIWLNSTLXE GLILFRVSVS ISQELWQKLE QRFGGISDAH IHQLRSRLQL  300
I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184700.0HQ418470.1 Malus x domestica transcriptional regulator superman (SUP13b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288051.11e-138transcriptional regulator SUPERMAN-like
TrEMBLF6KKF71e-136F6KKF7_MALDO; Transcriptional regulator superman
STRINGXP_008391177.11e-137(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-15C2H2 family protein