PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000509120
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 325aa    MW: 36502.9 Da    PI: 4.5779
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000509120genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.6e-1989142356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t++q++ Le+ F  ++++  e++  LAk lgL+ rqV +WFqNrRa++k
  MDP0000509120  89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWK 142
                    56689************************************************9 PP
2HD-ZIP_I/II127.75.1e-4189178291
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    kkrrl+++qv++LE+sF+ e+kLeperKv la++Lglqprqva+WFqnrRAR+ktk+lEkdye+L+++y++lk++ e+L+ke+++L++e+
  MDP0000509120  89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWKTKHLEKDYEVLQANYNNLKANCESLSKENDKLKAEV 178
                    9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-1977145IPR009057Homeodomain-like
PROSITE profilePS5007116.64984144IPR001356Homeobox domain
SMARTSM003892.0E-1886148IPR001356Homeobox domain
CDDcd000861.24E-1687145No hitNo description
PfamPF000462.7E-1689142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1991151IPR009057Homeodomain-like
PRINTSPR000319.5E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000319.5E-5124140IPR000047Helix-turn-helix motif
PfamPF021834.4E-14144186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAGGRVNGGR NSSVLSALLQ NQRSSEPLDS LFLSGSSNSS SASFLGSRSM XSFEDVRGGS  60
GXNRSLFHQY EHEDNGEDDL GEYLHQPGKK RRLTADQVQF LEKSFDVENK LEPERKVLLA  120
KDLGLQPRQV AIWFQNRRAR WKTKHLEKDY EVLQANYNNL KANCESLSKE NDKLKAEVLI  180
LSDKLQLKEK ERENSELSDT NXLSQELPQK PIADSASEGE VSKVSAVASK QEDHSSGRSD  240
IFDSDSPHYX DGVHSSLLEP GDSSYVFEPE QSDLSQDEED NFSKSLLPPY IFPKLEDVDY  300
SDTPANSCNF GFPMEDHAFW SWSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.25940.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947055.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A498HX630.0A0A498HX63_MALDO; Uncharacterized protein
STRINGXP_009343428.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-43homeobox 1