PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000501598
Common NameC3HL6
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 370aa    MW: 40808.2 Da    PI: 8.3089
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000501598genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.5e-08134155426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    + C++f++ G+C+ Gd C FaHg
  MDP0000501598 134 AACPDFRK-GHCPKGDLCEFAHG 155
                    78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.01483119IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5130156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497131157IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-6134155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5135157IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.986165189IPR000571Zinc finger, CCCH-type
SMARTSM0035622165188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMLGEPTRLH PTIQVPPWDS FDDHTPTSPF LIPVHSVNSN GNASNGGDFS PLSPVFLDSL  60
AALHRYLPSN ESDSLAXDPD MXMNPISCDQ FRMFEFKVRR CARGRSHDWT DCPYAHPGEK  120
ARRRDPRKYH YSGAACPDFR KGHCPKGDLC EFAHGVFECW LHPARYRTQP CKDGLGCNRR  180
VCFFAHTPEQ LRVLPGQSPR TQGSGAFDSY PFGSPPASIL MSPPLSPPSE SPPMSPNSPQ  240
HGRNSVSELV ASMRNFKLAK MKMNSPPSWG AQMGSGFGPS PRGSAFRSGF CSLPLTPTRT  300
TXRVGPNPVD LWDQRCGEEP AMERVESGRD LRARMYARLS KENSFGRVAR VDSGSSAPDV  360
GWISELVSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.98780.0bud| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377933.20.0zinc finger CCCH domain-containing protein 23-like
SwissprotQ9M0G21e-113C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLD9ZIV30.0D9ZIV3_MALDO; C3HL domain class transcription factor
STRINGXP_009361457.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-105C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]