PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000498229 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HSF | ||||||||
Protein Properties | Length: 241aa MW: 27504.6 Da PI: 7.8728 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 83.5 | 3e-26 | 138 | 205 | 2 | 69 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SS CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdee 69 Fl+k+y++++d++ ++++sw+e+g+sfvv+d++efak++Lp yFkh+nf+SFvRQLn+Y + ++ e MDP0000498229 138 FLTKTYDLVDDPSSNHMVSWTESGSSFVVWDPTEFAKEMLPMYFKHNNFSSFVRQLNTYIVSLIEPIE 205 9**********************************************************766666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.7E-29 | 134 | 228 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.82E-25 | 134 | 207 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.3E-28 | 135 | 239 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.7E-15 | 138 | 161 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.1E-22 | 138 | 200 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-15 | 176 | 188 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-15 | 189 | 201 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVAVGRDGGG WWRSHCSRCR RREEINQREK QEGEKQNREG ERVIYGSQLY GLLHXYTIGD 60 EXIGVNFLGT TIIGRVEMDL ETXSSSCRXV WLGXGCGSRT RQMTEWVYWR ATCSSSGXER 120 LWIMEGSQGG SGGAPAPFLT KTYDLVDDPS SNHMVSWTES GSSFVVWDPT EFAKEMLPMY 180 FKHNNFSSFV RQLNTYIVSL IEPIEKEVVP PQKLAGSIES KWKNVWRRED LNMAKTMKRL 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-19 | 129 | 206 | 12 | 88 | Heat shock factor protein 1 |
5d5u_B | 6e-19 | 129 | 206 | 21 | 97 | Heat shock factor protein 1 |
5d5v_B | 6e-19 | 129 | 206 | 21 | 97 | Heat shock factor protein 1 |
5d5v_D | 6e-19 | 129 | 206 | 21 | 97 | Heat shock factor protein 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G63350.1 | 2e-26 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000498229 |