PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000478356
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 1207aa    MW: 136320 Da    PI: 6.0353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000478356genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-1778130156
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg+++t eeAa+a+++a+ +++g+
  MDP0000478356  78 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYDTQEEAAAAYDKAAIEYRGA 130
                    89****99**********99966...3.6*************************995 PP
2FAR145.82e-14422496290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     Y++YA++vGFs+ + + ++ k +g i++ +f Cs+e +++++ ++              C+a+l++++++ + w+ tk++++HnH+++
  MDP0000478356 422 LYDAYARNVGFSTHVGQFTRAKPDGPIVTWDFACSREVFKRKNVES--------------CNAMLRIERKDANSWVTTKFVEDHNHSMV 496
                    59**************************************999877..............**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.079749IPR001471AP2/ERF domain
PROSITE profilePS510329.4271543IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-51544IPR001471AP2/ERF domain
PfamPF008476.7E-1278129IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1778139IPR016177DNA-binding domain
CDDcd000182.40E-1678139No hitNo description
PROSITE profilePS5103218.43979137IPR001471AP2/ERF domain
SMARTSM003808.0E-2679143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1879137IPR001471AP2/ERF domain
PfamPF031019.8E-12422496IPR004330FAR1 DNA binding domain
PfamPF105511.0E-29628720IPR018289MULE transposase domain
PfamPF044349.1E-11893939IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.152905941IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8916943IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1207 aa     Download sequence    Send to blast
MAMVAAGVVF NKIWAYDSEE AAAHTYDLAA LKYWGPGTIL NFPQETYTKE IEEMQKATRE  60
EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY DTQEEAAAAY  120
DKAAIEYRGA NAVTNFDISN YIDRVKKKIH PLDHQESEGQ PPSTCSNIGP PQEEEEEEVD  180
RKVHPLLPQQ QQQQQQQEQE QEQCKVHQLQ PQQEQQQQEK QELKQERMIS PQLHYPHLLH  240
CIESNTMEQV MDPEHAKEHQ FSWNFLDTGM ITQQLPVPED IHLDKSLELP DLFEDLGFEE  300
NFDLIFGAAG DGSLGGLMES AGSGVDQVGV QRNLEDNGGN GTSIPSPKIE ARRNQTTVME  360
TEVLVDAEGE NLEHHMAENN EPDKGQKQNV KENFSGREVN IQDDSKPHVG MEFESEDAAK  420
ILYDAYARNV GFSTHVGQFT RAKPDGPIVT WDFACSREVF KRKNVESCNA MLRIERKDAN  480
SWVTTKFVED HNHSMVSPSK VHYLRPRRHF AGATKNTSET LDATTDSYFS MDGNHVSYEP  540
NRGGRSVSPV EPNHSARNLR PVNCIRPCSR KRTLGRDAQN LLNYFKKMQA ENPGFFYAIQ  600
LDDENRMTNV FWVDARSRTA YNHFGDAVIF DTMYRPNHYQ VPFAPFTGVN HHGQKVLFGC  660
ALLLDESESN FTWLFRTWLS AMNDRPPVSI TTDQDRAIQV AVAQVFPETR HCICKWHILR  720
EGQERLAHVY LAHPSFYGEL YSCINFSETI EDFESSWASL LDRYDLLRND WLQAVYNARK  780
QWAPVYFHGT FFAAISSNQG ISSFFDGYVN QQMSIPMFFK QYERALEHSL EKEIEADIDT  840
MCTTPVLKTP SPMEQQAANL YTKKVFAKFQ EELVETFVYT ANKIEGDGIV SKYRVAKYEH  900
DDKAYMVILN VSEIKASCSC QMFEYSGILC RHILTVFTVT NVLTLPSHYI LKRWTRNAKS  960
WVGPDEQSSD LQGIETLTMR FNNLCREAIK YAEEGAVGLE TYNAAMSALR EGGKKIAVVK  1020
KNVAKVTPPX SQASGNAQED SLKTSQLPPG EIAPSLWPWQ EALPHRFNLN DGGVPAADLN  1080
QPSMAPVSIH PDGGSLDSTS MTWIIENKNS TSAGKVAVIN LKLQDYGKNP AGEKEVQFRL  1140
TRVTLEPMLK SMAYISQQLS APANRVAVIN LKGRVTSSPV VYTTVHGAVA FPIAVHGGLL  1200
GPAVLV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375417.20.0protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_017188898.20.0protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_028961065.10.0protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLM5X6W30.0M5X6W3_PRUPE; Uncharacterized protein
STRINGXP_008375417.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]