PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000465513

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 628aa MW: 71005.3 Da PI: 5.5128

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000465513	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	257.7	4.2e-79	262	625	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 + l++Ae v +++e+a++lL r + as + +p+qR+++yf++AL++r+ +++++yk ++s+ s n ++ + +f++ +P++ + + MDP0000465513 262 AHIFLAAAEKVGYQQFERANRLLLRCEFAASFKVNPVQRVVFYFAKALRERIDXeTGNSMYKGNEMSTYS--NGLSTNLTTLAFYQXTPFHSVMQY 355 578899********************************************997888899888877776..33334344457********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 q Ile v e++vH iD++i G+ W L++ L R+e p l iT+vg + k+++eetg+rLa++Ae+l++pf+f++++++++ed++ MDP0000465513 356 PGIQVILEXVVLESKVHLIDLEIRXGVXWXGLMEVLVGREECPIeLLTITAVGV---TGKQKIEETGRRLASVAEALNLPFQFKAVIVTDMEDVKD 448 ***********************************97665499***...68********************************* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 + ++vk +Ea++V l ++ ++ +le+ ++++ + l P v vv+e ea+hns+sF++rf++al yysa+fd+le+ + +++++r+ +E MDP0000465513 449 QLFDVKDDEAVVVYAPXILRTMISRXSCLEN----LMRVXRXLTPCVXVVIEVEANHNSPSFVNRFIDALFYYSAFFDCLETCM-KQEKDRVLMEG 539 ******************988888887....*******************************************96.66677777776 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++ i+n+v +eg+er+ r t+e Wr+ + + +++ls+ a qa+l+ +k++s +++ + ++l+ gWk+ p+ s+SaW+ MDP0000465513 540 L-LHEGIRNIVVAEGSERVVRSVTMEVWRAFFARLRIVEINLSNVALYQASLVAKKFGSPPCTLDRNGKCLIVGWKGTPIHSLSAWK 625 5.****************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.218	235	605	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-76	262	625	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MANAFFSFTP FDFGVLGGGS GLTSQLEXYE KEDQELKGKP DHLFGIEELG LGEMEKLSHL 60 SKDQQQSKAS YLMLDNFSFD TGCSEHDLQR SSSKCEKARS HVSKDHDHRH YQQQNQHYQQ 120 PSKSNYSDWD NFTFDSAFSS TQPIQDATNE LTHSQIGESD IAETNKQMPH QSSLAVLELL 180 NNYGSAFKNL RGDRLSNRCN EAEASXFSIQ QKLSTEEIMR VAGARYVQFS NQGYGDFFMP 240 LHPFGYALSG LSEEETKDVE LAHIFLAAAE KVGYQQFERA NRLLLRCEFA ASFKVNPVQR 300 VVFYFAKALR ERIDXETGNS MYKGNEMSTY SNGLSTNLTT LAFYQXTPFH SVMQYPGIQV 360 ILEXVVLESK VHLIDLEIRX GVXWXGLMEV LVGREECPIE LLTITAVGVT GKQKIEETGR 420 RLASVAEALN LPFQFKAVIV TDMEDVKDQL FDVKDDEAVV VYAPXILRTM ISRXSCLENL 480 MRVXRXLTPC VXVVIEVEAN HNSPSFVNRF IDALFYYSAF FDCLETCMKQ EKDRVLMEGL 540 LHEGIRNIVV AEGSERVVRS VTMEVWRAFF ARLRIVEINL SNVALYQASL VAKKFGSPPC 600 TLDRNGKCLI VGWKGTPIHS LSAWKFT*

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MANAFFSFTP FDFGVLGGGS GLTSQLEXYE KEDQELKGKP DHLFGIEELG LGEMEKLSHL  60
SKDQQQSKAS YLMLDNFSFD TGCSEHDLQR SSSKCEKARS HVSKDHDHRH YQQQNQHYQQ  120
PSKSNYSDWD NFTFDSAFSS TQPIQDATNE LTHSQIGESD IAETNKQMPH QSSLAVLELL  180
NNYGSAFKNL RGDRLSNRCN EAEASXFSIQ QKLSTEEIMR VAGARYVQFS NQGYGDFFMP  240
LHPFGYALSG LSEEETKDVE LAHIFLAAAE KVGYQQFERA NRLLLRCEFA ASFKVNPVQR  300
VVFYFAKALR ERIDXETGNS MYKGNEMSTY SNGLSTNLTT LAFYQXTPFH SVMQYPGIQV  360
ILEXVVLESK VHLIDLEIRX GVXWXGLMEV LVGREECPIE LLTITAVGVT GKQKIEETGR  420
RLASVAEALN LPFQFKAVIV TDMEDVKDQL FDVKDDEAVV VYAPXILRTM ISRXSCLENL  480
MRVXRXLTPC VXVVIEVEAN HNSPSFVNRF IDALFYYSAF FDCLETCMKQ EKDRVLMEGL  540
LHEGIRNIVV AEGSERVVRS VTMEVWRAFF ARLRIVEINL SNVALYQASL VAKKFGSPPC  600
TLDRNGKCLI VGWKGTPIHS LSAWKFT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-33	269	624	27	378	Protein SCARECROW
5b3h_A	1e-33	269	624	26	377	Protein SCARECROW
5b3h_D	1e-33	269	624	26	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008386716.2	0.0	DELLA protein RGL1-like
TrEMBL	A0A498IMH3	0.0	A0A498IMH3_MALDO; Histone-lysine N-methyltransferase
STRING	XP_008362179.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	6e-51	RGA-like 1

Link Out ? help Back to Top
Phytozome	MDP0000465513