PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000451827
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 274aa    MW: 31875.7 Da    PI: 10.2902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000451827genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.47e-17119160344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 
                    i+n+  r+ tf kR++g+lKK +EL +LCd++++ ii+++++
  MDP0000451827 119 IQNDQTRKLTFKKRKKGLLKKMSELTILCDVQACAIIYGKHD 160
                    99*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004047.7E-7111131IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-14115168IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.619116157IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-20116203IPR002100Transcription factor, MADS-box
PfamPF003194.7E-16119159IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-7131146IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-7146167IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MARAKIYDGP NLPFNPRTGS ISINEYMRRY RMIRSCATNK YLQQDLVAHL WVKRSMDFKQ  60
NYGQLQAGWK VPALWPFGPF RFRGAHDPSG LALDWRWLLG YFRPSGLLDY SVGDXLAYIQ  120
NDQTRKLTFK KRKKGLLKKM SELTILCDVQ ACAIIYGKHD TQDEVWPSSA GVQRTYTKFK  180
TMPSMEQTKK YLNMETLLRQ QIEKEKDQLR KLGVLMQDTL NGKSPILSEE WGRSCENFFE  240
GLSYLKALMR NQELFRAKMN TTEQPRGVWK GIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129133KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-22AGAMOUS-like 80