PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000446238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 124aa MW: 13390.7 Da PI: 7.507 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 35.1 | 3.9e-11 | 10 | 51 | 56 | 97 |
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++s++yeA+ r+ +P yG+vg++++++++ +q++++++l MDP0000446238 10 SIFKSVLYEACGRIVNPTYGSVGLMWSGSWDQCQAAVDAVLE 51 689********************************9998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.0E-6 | 10 | 47 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MGHAFITSSS IFKSVLYEAC GRIVNPTYGS VGLMWSGSWD QCQAAVDAVL EGPPITGIDA 60 DALQQNTNPN LDPPHISGDI RYVSTDTNSG XSSRNKARTL EQVEKVHKPA QSPTRFCNRV 120 KHQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356758.1 | 3e-49 | PREDICTED: LOB domain-containing protein 42-like | ||||
Swissprot | Q9CA30 | 6e-25 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A498I8Q7 | 2e-78 | A0A498I8Q7_MALDO; Uncharacterized protein | ||||
STRING | XP_008360156.1 | 1e-79 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-27 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000446238 |