PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000441088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 628aa MW: 71135.1 Da PI: 5.5206 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 255.3 | 2.2e-78 | 262 | 625 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 + l++Ae v +++e+a++lL r + as + +p+qR+++yf++AL++r+ +++++yk ++s+ s n ++ + +f++ +P++ + + MDP0000441088 262 AHIFLAAAEKVGYQQFERANRLLLRCEFAASFKVNPVQRVVFYFAKALRERIDXeTGNSMYKGNEMSTYS--NGLSTNLTTLAFYQXTPFHSVMQY 355 578899**********************************************997888899888877776..33334344457************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 q Ile v e++vH iD++i G+ W L++ L R+e p l iT+vg + k+++eetg+rLa++Ae+l++pf+f++++++++ed++ MDP0000441088 356 PGIQVILEXVVLESKVHLIDLEIRXGVXWXGLMEVLVGREECPIeLLTITAVGV---TGKQKIEETGRRLASVAEALNLPFQFKAVIVTDMEDVKD 448 ***************************************97665499*******...68************************************* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 + ++vk +Ea++V l ++ ++ +le+ ++++ + l P v vv+e ea+hns+sF++rf++al yysa+fd+le+ ++++ r+ +E MDP0000441088 449 QLFDVKDDEAVVVYAPXILRTMISRXSCLEN----LMRVXRXLTPCVXVVIEVEANHNSPSFVNRFIDALFYYSAFFDCLETC-XKQEKXRVLMEX 539 **********************988888887....**********************************************99.566677777776 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++ i+n+v +eg+er+ r t+e Wr+ + + +++ls+ a qa l+ +k++s +++ + ++l+ gWk+ p+ s+SaW+ MDP0000441088 540 L-LHEGIRNIVVAEGSERVVRSVTMEVWRAFFARXRXVEINLSNXALYQAXLVAKKFGSPPCTLDRNGKCLIVGWKGTPIHSLSAWK 625 6.********************************************************999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.184 | 235 | 605 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.7E-76 | 262 | 625 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MANAFFSFTP FDFGVLGGGS GLTSQLEXYE KEDQELKGKP DHLFGIEELG LGEMEKLSHL 60 SKDQQQSKAS YLMLDNFSFD TGCSEHDLQR SSSKCEKARS HVSKDHDHRH YQQQNQHYQQ 120 PSKSNYSDWD NFTFDSAFXS TQPIQDATNE LTXSQIGESD IAETNKQMPH QSSLAVLELL 180 NNYGSAFKNL RGDRLSNRCN EAEASXFSIQ QKLSTEEIMR VAGARYVQFS NQGYGDFFMP 240 LHPFGYALSG LSEEETKDVE LAHIFLAAAE KVGYQQFERA NRLLLRCEFA ASFKVNPVQR 300 VVFYFAKALR ERIDXETGNS MYKGNEMSTY SNGLSTNLTT LAFYQXTPFH SVMQYPGIQV 360 ILEXVVLESK VHLIDLEIRX GVXWXGLMEV LVGREECPIE LLTITAVGVT GKQKIEETGR 420 RLASVAEALN LPFQFKAVIV TDMEDVKDQL FDVKDDEAVV VYAPXILRTM ISRXSCLENL 480 MRVXRXLTPC VXVVIEVEAN HNSPSFVNRF IDALFYYSAF FDCLETCXKQ EKXRVLMEXL 540 LHEGIRNIVV AEGSERVVRS VTMEVWRAFF ARXRXVEINL SNXALYQAXL VAKKFGSPPC 600 TLDRNGKCLI VGWKGTPIHS LSAWKFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-33 | 269 | 624 | 26 | 377 | Protein SCARECROW |
5b3h_D | 3e-33 | 269 | 624 | 26 | 377 | Protein SCARECROW |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008386716.2 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A498IMH3 | 0.0 | A0A498IMH3_MALDO; Histone-lysine N-methyltransferase | ||||
STRING | XP_008362179.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-50 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000441088 |