PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000430686

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 396aa MW: 44320 Da PI: 7.0548

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000430686	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.9	1.2e-31	38	136	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++r++C++dCv+apyf +++ ++f++vh++FG+sn++kllk+l++++ r +a++s ++eA ++ +dPv+G +g ++kl+++ e l++ l+ MDP0000430686 38 ACAACRHQRKRCEEDCVMAPYFTNKD-EDFKAVHRIFGVSNMTKLLKQLEDQNhRGTAVQSFIWEAYMWNQDPVNGPLGKYRKLERENELLRNALN 132 7******************98776.99****************877769**********************************99999 PP DUF260 96 llke 99 + ++ MDP0000430686 133 EEQK 136 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.847	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-30	38	134	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MESRKRASLW KVTSMVYYIS MSMGSSSSAG EPVAGRHACA ACRHQRKRCE EDCVMAPYFT 60 NKDEDFKAVH RIFGVSNMTK LLKQLEDQNH RGTAVQSFIW EAYMWNQDPV NGPLGKYRKL 120 ERENELLRNA LNEEQKALAL AASTTEEEPL ALGQENNNNS GNIADDVEGV IPIYGSSLNY 180 GYANQSLAID GSTNGTYTNL LQGQEATEMS QGQQVLGQGR GFHHGVVLVK QEAPDQRRVV 240 GLGSSSEHFG SVGLMSSPTF QYQRLMQFEG LPNIGPHING HGRGQVVFDP SVGQEQQRAL 300 GLVGAPQIGP NFGDFSLEGH RRSTITQRHD DRYSPYHHRQ PQQQQQHHPV NAQRQAMNQG 360 QNHHNFQRYS SLHNFHSYDN VQDAEQFNQV KSERP*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MESRKRASLW KVTSMVYYIS MSMGSSSSAG EPVAGRHACA ACRHQRKRCE EDCVMAPYFT  60
NKDEDFKAVH RIFGVSNMTK LLKQLEDQNH RGTAVQSFIW EAYMWNQDPV NGPLGKYRKL  120
ERENELLRNA LNEEQKALAL AASTTEEEPL ALGQENNNNS GNIADDVEGV IPIYGSSLNY  180
GYANQSLAID GSTNGTYTNL LQGQEATEMS QGQQVLGQGR GFHHGVVLVK QEAPDQRRVV  240
GLGSSSEHFG SVGLMSSPTF QYQRLMQFEG LPNIGPHING HGRGQVVFDP SVGQEQQRAL  300
GLVGAPQIGP NFGDFSLEGH RRSTITQRHD DRYSPYHHRQ PQQQQQHHPV NAQRQAMNQG  360
QNHHNFQRYS SLHNFHSYDN VQDAEQFNQV KSERP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-15	25	138	4	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-15	25	138	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352961.1	0.0	PREDICTED: LOB domain-containing protein 30-like
TrEMBL	A0A498IVF3	0.0	A0A498IVF3_MALDO; Uncharacterized protein
STRING	XP_009352961.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14786	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	4e-20	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	MDP0000430686