PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000424752

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YC

Protein Properties

Length: 369aa MW: 41399.3 Da PI: 4.5339

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000424752	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.1	8.1e-13	163	242	18	96
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96 + e+P r+k+i+k d d+++i +ea l+s + +lf+ l+ rs a e kr+ +k + av+r + dfl+d+ MDP0000424752 163 RPEFPNGRVKRIMKLDRDINKINSEALLLVSYSAQLFLEFLAERSAEVATERKRKVVKLEHMRVAVKRHRpTCDFLIDEL 242 5689************************************************************9975489***75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.18E-16	119	231	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.6E-16	162	229	IPR009072	Histone-fold
Pfam	PF00808	1.4E-17	165	228	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MAGTKRFCPN SHRLKLQSXI NCHDSRHTTS XILSIRNLST EYFPPIQKPK HRFPLFHXSF 60 RTRASPPSMA EEEIAAPEEX NPAGXEEEXS VQEEENPVPE EEEENPVPEE EEENPAGEEE 120 NPAQEEQENS VPEGEENPAR EKEKAAKGKG KAVAEEWNAN RIRPEFPNGR VKRIMKLDRD 180 INKINSEALL LVSYSAQLFL EFLAERSAEV ATERKRKVVK LEHMRVAVKR HRPTCDFLID 240 ELTVPSQPSN HPATDRSQGR SVVSSSAPAK RDRSRTAADR PAPAGTRLID GFFHKLAKKS 300 PIQTEEAPIE IDEASIETDD APIEIDNGPI TNDDAPIEVD DVPIESDEAS IENEEPLIET 360 HEARIEIN*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MAGTKRFCPN SHRLKLQSXI NCHDSRHTTS XILSIRNLST EYFPPIQKPK HRFPLFHXSF  60
RTRASPPSMA EEEIAAPEEX NPAGXEEEXS VQEEENPVPE EEEENPVPEE EEENPAGEEE  120
NPAQEEQENS VPEGEENPAR EKEKAAKGKG KAVAEEWNAN RIRPEFPNGR VKRIMKLDRD  180
INKINSEALL LVSYSAQLFL EFLAERSAEV ATERKRKVVK LEHMRVAVKR HRPTCDFLID  240
ELTVPSQPSN HPATDRSQGR SVVSSSAPAK RDRSRTAADR PAPAGTRLID GFFHKLAKKS  300
PIQTEEAPIE IDEASIETDD APIEIDNGPI TNDDAPIEVD DVPIESDEAS IENEEPLIET  360
HEARIEIN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.15824	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017178973.2	0.0	transcription regulator complex subunit bur6-like
TrEMBL	A0A498HPR1	0.0	A0A498HPR1_MALDO; Uncharacterized protein
STRING	XP_009337486.1	1e-141	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11105	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	1e-42	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	MDP0000424752