PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000424666
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 564aa    MW: 63539.5 Da    PI: 8.9372
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000424666genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.53.6e-2865149187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+ aL+++r++m+ ++r+++lk+plWe+vs+k+ e g+ rs+k+Ckek+en+ k+++++keg++k+  ++ +t+++fd+lea
  MDP0000424666  65 RWPRQETVALLKIRSQMDAAFRDSSLKAPLWEDVSRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSKK--QEGKTYRFFDELEA 149
                    8********************************************************************97..55557******985 PP
2trihelix98.46.3e-31408492186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW++ ev aLi++r++++ +++++  k+ lWee+s+ mr+ g++rs+k+Ck kwen+nk+ykk+k ++k r se s+tcpyf+ql+
  MDP0000424666 408 RWPRVEVEALINLRTYLDVKYQEAGPKGSLWEEISAGMRRLGYNRSAKRCKXKWENINKYYKKVKVSSKTR-SEGSKTCPYFHQLD 492
                    8********************************************************************98.78889*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002262124IPR001005SANT/Myb domain
PROSITE profilePS500906.73764122IPR017877Myb-like domain
PfamPF138372.9E-1864149No hitNo description
CDDcd122031.26E-2264129No hitNo description
SMARTSM007170.022405467IPR001005SANT/Myb domain
PfamPF138372.3E-21407492No hitNo description
CDDcd122031.82E-26408472No hitNo description
PROSITE profilePS500907.05408465IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MPALPVPVPD NSSTMLASSG GSSGGEAATM AEVVREGRQE SETTDVLSNS VQEGNKGHRL  60
YGGNRWPRQE TVALLKIRSQ MDAAFRDSSL KAPLWEDVSR KLGELGYYRS AKKCKEKFEN  120
VYKYHRRTKE GRSKKQEGKT YRFFDELEAF DHQNHHHSST IIPAKPQVVL WPTMNNNHPN  180
NPSLVVPHVT TTTTLPLSST SSIMTPTNGS LPNGPQISPP HITKSPLNLS QQNINGFKPN  240
SATNNLFSSS TSSSASDEEF QVQPRDKRKM KWRYFFKRXT KDVLEKQEKL QEKFLEAIAK  300
CEHQRMVREA AWRKEEMARM SKEHEILAQE RSLAAAQDAA VIEFLQKFSG QQNSTSIQAL  360
EAPSSRPHPL PVLMPPPLQA PVAVVTSSTF DVPKLDNSES PLPAGSTRWP RVEVEALINL  420
RTYLDVKYQE AGPKGSLWEE ISAGMRRLGY NRSAKRCKXK WENINKYYKK VKVSSKTRSE  480
GSKTCPYFHQ LDILHSKKNN KNNAGHVVKP NAETMQPLIN VQPDQPAIED IERENGDRNE  540
DDEDGESTEE EDRSDDQMET VXN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381818.20.0trihelix transcription factor GT-2-like
TrEMBLA0A498IPX80.0A0A498IPX8_MALDO; Uncharacterized protein
STRINGXP_008381818.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-104Trihelix family protein